compute.snps: Compute genotype/haplotype

In MoBPS: Modular Breeding Program Simulator

Description

Internal function for the computation of genotypes & haplotypes

Usage

compute.snps(
  population,
  gen,
  sex,
  nr,
  faster = TRUE,
  import.position.calculation = NULL,
  from_p = 1,
  to_p = Inf,
  decodeOriginsU = decodeOriginsR,
  bit.storing = FALSE,
  nbits = 30,
  output_compressed = FALSE
)

Arguments

population	Population list
gen	Generation of the individual to compute
sex	Gender of the individual to compute
nr	Number of the individual to compute
faster	If FALSE use slower version to compute markers between recombination points
import.position.calculation	Function to calculate recombination point into adjacent/following SNP
from_p	First SNP to consider
to_p	Last SNP to consider
decodeOriginsU	Used function for the decoding of genetic origins [[5]]/[[6]]
bit.storing	Set to TRUE if the MoBPS (not-miraculix! bit-storing is used)
nbits	Bits available in MoBPS-bit-storing
output_compressed	Set to TRUE to get a miraculix-compressed genotype/haplotype

Value

haplotypes for the selected individual

Examples

data(ex_pop)
compute.snps(ex_pop, gen=1, sex=1, nr=1)

MoBPS documentation built on Nov. 9, 2021, 5:08 p.m.