analyze.population: Analyze allele frequency of a single marker

In MoBPS: Modular Breeding Program Simulator

Description

Analyze allele frequency of a single marker

Usage

analyze.population(
  population,
  chromosome = NULL,
  snp = NULL,
  snp.name = NULL,
  database = NULL,
  gen = NULL,
  cohorts = NULL
)

Arguments

population	Population list
chromosome	Number of the chromosome of the relevant SNP
snp	Number of the relevant SNP
snp.name	Name of the SNP to analyze
database	Groups of individuals to consider for the export
gen	Quick-insert for database (vector of all generations to export)
cohorts	Quick-insert for database (vector of names of cohorts to export)

Value

Frequency of AA/AB/BB in selected gen/database/cohorts

Examples

data(ex_pop)
analyze.population(ex_pop, snp=1, chromosome=1, gen=1:5)

Example output

#############################################################
############ Modular Breeding Program Simulator #############
#############################################################
################ Version: 1.4.87 (27-03-2020) ###############
######## To update to the most recent stable version: #######
## devtools::install_github('tpook92/MoBPS', subdir='pkg') ##
#############################################################
################ Web-interface: www.mobps.de ################
### Extended documentation: www.github.com/tpook92/MoBPS ####
#############################################################
     [,1] [,2] [,3] [,4] [,5]
[1,]   44   40   39   46   46
[2,]    5   10   10    4    4
[3,]    1    0    1    0    0

MoBPS documentation built on Nov. 9, 2021, 5:08 p.m.