analyze.population: Analyze allele frequency of a single marker

Description Usage Arguments Value Examples

View source: R/analyze.population.R

Description

Analyze allele frequency of a single marker

Usage

1
2
analyze.population(population, chromosome, snp, database = NULL,
  gen = NULL, cohorts = NULL)

Arguments

population

Population list

chromosome

Number of the chromosome of the relevant SNP

snp

Number of the relevant SNP

database

Groups of individuals to consider for the export

gen

Quick-insert for database (vector of all generations to export)

cohorts

Quick-insert for database (vector of names of cohorts to export)

Value

Frequency of AA/AB/BB in selected gen/database/cohorts

Examples

1
2
data(ex_pop)
analyze.population(ex_pop, snp=1, chromosome=1, gen=1:5)

Example output

#############################################################
############ Modular Breeding Program Simulator #############
#############################################################
################ Version: 1.4.87 (27-03-2020) ###############
######## To update to the most recent stable version: #######
## devtools::install_github('tpook92/MoBPS', subdir='pkg') ##
#############################################################
################ Web-interface: www.mobps.de ################
### Extended documentation: www.github.com/tpook92/MoBPS ####
#############################################################
     [,1] [,2] [,3] [,4] [,5]
[1,]   44   40   39   46   46
[2,]    5   10   10    4    4
[3,]    1    0    1    0    0

MoBPS documentation built on March 31, 2020, 5:22 p.m.