derive.loop.elements: Derive loop elements

In MoBPS: Modular Breeding Program Simulator

Description

Internal function to derive the position of all individuals to consider for BVE/GWAS

Usage

derive.loop.elements(
  population,
  bve.database,
  bve.class,
  bve.avoid.duplicates,
  store.adding = FALSE,
  store.which.adding = FALSE,
  list.of.copys = FALSE
)

Arguments

population	Population list
bve.database	Groups of individuals to consider in breeding value estimation
bve.class	Consider only animals of those class classes in breeding value estimation (default: NULL - use all)
bve.avoid.duplicates	If set to FALSE multiple generatations of the same individual can be used in the bve (only possible by using copy.individual to generate individuals)
store.adding	Internal parameter to derive number of added individuals per database entry (only relevant internally for GWAS)
store.which.adding	Internal parameter to derive which individuals are copy entries
list.of.copys	Internal parameter to derive further information on the copies individuals

Value

Matrix of individuals in the entered database

Examples

data(ex_pop)
derive.loop.elements(ex_pop, bve.database=get.database(ex_pop, gen=2),
bve.class=NULL, bve.avoid.duplicates=TRUE)

MoBPS documentation built on Nov. 9, 2021, 5:08 p.m.