get.admixture: Admixture Plot

In MoBPS: Modular Breeding Program Simulator

Description

Function to generate admixture plots

Usage

get.admixture(
  population,
  geno = NULL,
  gen = NULL,
  database = NULL,
  cohorts = NULL,
  d = NULL,
  verbose = TRUE,
  plot = TRUE,
  sort = FALSE,
  sort.cutoff = 0.01
)

Arguments

population	Population list
geno	Manually provided genotype dataset to use instead of gen/database/cohorts
gen	Quick-insert for database (vector of all generations to consider)
database	Groups of individuals to consider
cohorts	Quick-insert for database (vector of names of cohorts to consider)
d	dimensions to consider in admixture plot (default: automatically estimate a reasonable number)
verbose	Set to FALSE to not display any prints
plot	Set to FALSE to not generate an admixture plot
sort	Set to TRUE to sort individuals according to contributes from the first dimension
sort.cutoff	Skip individuals with contributions under this threshold (and use next dimension instead) data(ex_pop) get.admixture(ex_pop, gen=4:6, d=2, sort=TRUE)

Value

Matrix with admixture proportion

MoBPS documentation built on Nov. 9, 2021, 5:08 p.m.