Files in MoBPS

Modular Breeding Program Simulator

MD5

NAMESPACE

DESCRIPTION

R/kinship.development.R R/compute.costs.cohorts.R R/get.infos.R R/get.phylogenetic.tree.R R/find.chromo.R R/founder.simulation.R R/set.default.R R/get.qtl.R R/group.diff.R R/compute.snps.R R/get.cohorts.R R/get.pheno.off.count.R R/get.selectionbve.R R/bv.development.box.R R/get.pheno.off.R R/pedmap.to.phasedbeaglevcf.R R/get.haplo.R R/get.cullingtime.R R/add.combi.R R/derive.loop.elements.R R/get.bv.R R/get.pedigree.R R/kinship.emp.R R/clean.up.R R/get.pedmap.R R/breeding.intern.R R/new.base.generation.R R/get.dendrogram.R R/set.class.R R/get.class.R R/compute.costs.R R/get.npheno.R R/add.array.R R/kinship.exp.store.R R/analyze.population.R R/add.founder.kinship.R R/get.selectionindex.R R/sortd.R R/get.database.R R/summary.population.R R/bv.standardization.R R/get.pheno.R R/ld.decay.R R/OGC.R R/vlist.R R/demiraculix.R R/effect.estimate.add.R R/breeding.diploid.R R/creating.trait.R R/get.id.R R/find.snpbefore.R R/example.dataset.R R/get.effect.freq.R R/generation.individual.R R/get.creating.type.R R/check.parents.R R/creating.phenotypic.transform.R R/get.genotyped.snp.R R/get.genotyped.R R/edges.fromto.R R/get.dendrogram.heatmap.R R/get.vcf.R R/get.admixture.R R/calculate.bv.R R/mutation.intro.R R/combine.traits.R R/get.reliabilities.R R/effective.size.R R/get.death.point.R R/creating.diploid.R R/get.time.point.R R/get.individual.loc.R R/bv.development.R R/plot.population.R R/get.distance.R R/insert.bve.R R/json.simulation.R R/codeOriginsR.R R/get.recombi.R R/bitwise.storing.R R/miraculix.R R/get.map.R R/get.bve.R R/analyze.bv.R R/diag.mobps.R R/miesenberger.index.R R/add.diag.R R/get.effective.size.R R/get.age.point.R R/edit.animal.R R/ssGBLUP.R R/get.pca.R R/get.dendrogram.trait.R R/startup.R R/pedigree.simulation.R R/epi.R R/get.geno.R

data/ex_json.RData

data/sheep_chip.RData

data/ex_pop.RData

data/chicken_chip.RData

data/pig_chip.RData

data/cattle_chip.RData

data/maize_chip.RData

man/get.individual.loc.Rd man/sheep_chip.Rd man/get.dendrogram.trait.Rd man/creating.trait.Rd man/get.distance.Rd man/get.cohorts.Rd man/get.age.point.Rd man/compute.costs.Rd man/ex_json.Rd man/get.pedigree3.Rd man/bv.standardization.Rd man/get.bve.Rd man/pedigree.simulation.Rd man/kinship.exp.Rd man/get.effect.freq.Rd man/find.chromo.Rd man/kinship.emp.Rd man/get.reliabilities.Rd man/get.pheno.off.count.Rd man/sortd.Rd man/check.parents.Rd man/alpha_to_beta.Rd man/get.qtl.Rd man/vlist.Rd man/get.infos.Rd man/founder.simulation.Rd man/clean.up.Rd man/compute.costs.cohorts.Rd man/add.diag.Rd man/bv.development.Rd man/plot.population.Rd man/new.base.generation.Rd man/combine.traits.Rd man/get.dendrogram.Rd man/json.simulation.Rd man/get.time.point.Rd man/breeding.diploid.Rd man/decodeOriginsR.Rd man/epi.Rd man/get.map.Rd man/breeding.intern.Rd man/demiraculix.Rd man/creating.diploid.Rd man/get.creating.type.Rd man/pig_chip.Rd man/add.founder.kinship.Rd man/get.pheno.off.Rd man/get.bv.Rd man/add.combi.Rd man/ssGBLUP.Rd man/miesenberger.index.Rd man/insert.bve.Rd man/get.pca.Rd man/codeOriginsR.Rd man/get.database.Rd man/pedmap.to.phasedbeaglevcf.Rd man/creating.phenotypic.transform.Rd man/get.qtl.effects.Rd man/cattle_chip.Rd man/ld.decay.Rd man/compute.snps.Rd man/diag.mobps.Rd man/derive.loop.elements.Rd man/miraculix.Rd man/get.class.Rd man/analyze.population.Rd man/chicken_chip.Rd man/generation.individual.Rd man/mutation.intro.Rd man/get.selectionindex.Rd man/get.pedmap.Rd man/get.phylogenetic.tree.Rd man/get.npheno.Rd man/add.array.Rd man/get.genotyped.Rd man/summary.population.Rd man/get.vcf.Rd man/kinship.emp.fast.Rd man/get.haplo.Rd man/get.genotyped.snp.Rd man/get.pedigree.Rd man/get.effective.size.Rd man/get.qtl.variance.Rd man/set.default.Rd man/effect.estimate.add.Rd man/analyze.bv.Rd man/compute.snps_single.Rd man/get.dendrogram.heatmap.Rd man/get.pedigree2.Rd man/group.diff.Rd man/get.pheno.Rd man/get.id.Rd man/bit.storing.Rd man/maize_chip.Rd man/get.death.point.Rd man/find.snpbefore.Rd man/get.recombi.Rd man/edges.fromto.Rd man/kinship.development.Rd man/bit.snps.Rd man/get.cullingtime.Rd man/get.selectionbve.Rd man/get.geno.Rd man/get.admixture.Rd man/OGC.Rd man/set.class.Rd man/ex_pop.Rd man/effective.size.Rd man/calculate.bv.Rd man/bv.development.box.Rd man/edit_animal.Rd

MoBPS documentation built on Nov. 9, 2021, 5:08 p.m.