get.genotyped.snp: Derive which markers are genotyped of selected individuals

In MoBPS: Modular Breeding Program Simulator

Derive which markers are genotyped of selected individuals

Description

Function to derive which markers are genotyped for the selected individuals

Usage

get.genotyped.snp(
  population,
  database = NULL,
  gen = NULL,
  cohorts = NULL,
  id = NULL,
  export.alleles = FALSE,
  use.id = TRUE,
  array = NULL
)

Arguments

population	Population list
database	Groups of individuals to consider for the export
gen	Quick-insert for database (vector of all generations to export)
cohorts	Quick-insert for database (vector of names of cohorts to export)
id	Individual IDs to search/collect in the database
export.alleles	If TRUE export underlying alleles instead of just 012
use.id	Set to TRUE to use MoBPS ids instead of Sex_Nr_Gen based names (default: TRUE)
array	Use only markers available on the array

Value

Binary Coded is/isnot genotyped level for in gen/database/cohorts selected individuals

Examples

data(ex_pop)
genotyped.snps <- get.genotyped.snp(ex_pop, gen=2)

MoBPS documentation built on Nov. 5, 2025, 6:26 p.m.