get.genotyped.snp: Derive which markers are genotyped of selected individuals

In MoBPS: Modular Breeding Program Simulator

Description

Function to devide which markers are genotyped for the selected individuals

Usage

get.genotyped.snp(
  population,
  database = NULL,
  gen = NULL,
  cohorts = NULL,
  export.alleles = FALSE,
  use.id = FALSE
)

Arguments

population	Population list
database	Groups of individuals to consider for the export
gen	Quick-insert for database (vector of all generations to export)
cohorts	Quick-insert for database (vector of names of cohorts to export)
export.alleles	If TRUE export underlying alleles instead of just 012
use.id	Set to TRUE to use MoBPS ids instead of Sex_Nr_Gen based names (default: FALSE)

Value

Binary Coded is/isnot genotyped level for in gen/database/cohorts selected individuals

Examples

data(ex_pop)
genotyped.snps <- get.genotyped.snp(ex_pop, gen=2)

MoBPS documentation built on Nov. 9, 2021, 5:08 p.m.