get.phylogenetic.tree: Phylogenetic Tree

In MoBPS: Modular Breeding Program Simulator

Description

Function calculate a phylogenetic tree

Usage

get.phylogenetic.tree(
  population,
  path = NULL,
  database = NULL,
  gen = NULL,
  cohorts = NULL,
  method = NULL,
  individual.names = NULL,
  circular = FALSE
)

Arguments

population	Population list
path	provide a path if the dendrogram would be saved as a png-file
database	Groups of individuals to consider
gen	Quick-insert for database (vector of all generations to consider)
cohorts	Quick-insert for database (vector of names of cohorts to consider)
method	Method used to calculate genetic distances (default: "Nei", alt: "Rogers", "Prevosti", "Modified Rogers"
individual.names	Names of the individuals in the database ((default are MoBPS internal names based on position))
circular	Set to TRUE to generate a fan/circular layout tree

Value

Dendrogram plot for traits

Examples

data(ex_pop)
get.phylogenetic.tree(ex_pop, gen=1, circular=TRUE)

MoBPS documentation built on Nov. 9, 2021, 5:08 p.m.