kinship.emp.fast: Approximate empirical kinship

In MoBPS: Modular Breeding Program Simulator

Description

Function to compute empirical kinship for a set of individuals (not all pairs of individuals are evaluated)

Usage

kinship.emp.fast(
  animals = NULL,
  population = NULL,
  gen = NULL,
  database = NULL,
  cohorts = NULL,
  sym = FALSE,
  ibd.obs = 50,
  hbd.obs = 10
)

Arguments

animals	List of animals to compute kinship for
population	Population list
gen	Quick-insert for database (vector of all generations to export)
database	Groups of individuals to consider for the export
cohorts	Quick-insert for database (vector of names of cohorts to export)
sym	If True derive matrix entries below principle-diagonal
ibd.obs	Number of Individual pairs to sample for IBD estimation
hbd.obs	Number of Individuals to sample for HBD estimation

Value

Empirical kinship matrix (IBD-based since Founders) per gen/database/cohort

Examples

data(ex_pop)
kinship.emp.fast(population=ex_pop,gen=2)

MoBPS documentation built on Nov. 9, 2021, 5:08 p.m.