kinship.emp.fast: Approximate empirical kinship

In MoBPS: Modular Breeding Program Simulator

Approximate empirical kinship

Description

Function to compute empirical kinship for a set of individuals (not all pairs of individuals are evaluated)

Usage

kinship.emp.fast(
  population = NULL,
  animals = NULL,
  gen = NULL,
  database = NULL,
  cohorts = NULL,
  ibd.obs = 200,
  hbd.obs = 50
)

Arguments

population	Population list
animals	List of animals to compute kinship for
gen	Quick-insert for database (vector of all generations to export)
database	Groups of individuals to consider for the export
cohorts	Quick-insert for database (vector of names of cohorts to export)
ibd.obs	Number of Individual pairs to sample for IBD estimation
hbd.obs	Number of Individuals to sample for HBD estimation

Value

Empirical kinship matrix (IBD-based since Founders) per gen/database/cohort

Examples

data(ex_pop)
kinship.emp.fast(population=ex_pop,gen=2)

MoBPS documentation built on Nov. 5, 2025, 6:26 p.m.