kinship.development: Devolopment of genetic/breeding value

In MoBPS: Modular Breeding Program Simulator

Description

Function to plot genetic/breeding values for multiple generation/cohorts

Usage

kinship.development(
  population,
  database = NULL,
  gen = NULL,
  cohorts = NULL,
  json = FALSE,
  ibd.obs = 50,
  hbd.obs = 10,
  display.cohort.name = FALSE,
  display.time.point = FALSE,
  equal.spacing = FALSE,
  time_reorder = FALSE,
  display.hbd = FALSE
)

Arguments

population	population list
database	Groups of individuals to consider for the export
gen	Quick-insert for database (vector of all generations to export)
cohorts	Quick-insert for database (vector of names of cohorts to export)
json	If TRUE extract which cohorts to plot according to the json-file used in json.simulation
ibd.obs	Number of Individual pairs to sample for IBD estimation
hbd.obs	Number of Individuals to sample for HBD estimation
display.cohort.name	Set TRUE to display the name of the cohort in the x-axis
display.time.point	Set TRUE to use time point of generated to sort groups
equal.spacing	Equal distance between groups (independent of time.point)
time_reorder	Set TRUE to order cohorts according to the time point of generation
display.hbd	Set to TRUE to also display HBD in plot

Value

Estimated of avg. kinship/inbreeding based on IBD/HBD

Examples

data(ex_pop)
kinship.development(ex_pop,gen=1:5)

MoBPS documentation built on Nov. 9, 2021, 5:08 p.m.