Description Usage Arguments Value Examples
Generate LD pot
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population |
Population list |
genotype.dataset |
Genotype dataset (default: NULL - just to save computation time when get.geno was already run) |
chromosomen |
Only consider a specific chromosome in calculations (default: 1) |
dist |
Manuel input of marker distances to analyse |
step |
Stepsize to calculate LD |
max |
Maximum distance between markers to consider for LD-plot |
max.cases |
Maximum number of marker pairs to consider of each distance (default: 100; randomly sampled!) |
database |
Groups of individuals to consider for the export |
gen |
Quick-insert for database (vector of all generations to export) |
cohorts |
Quick-insert for database (vector of names of cohorts to export) |
type |
Compute LD decay according to following distance measure between markers (default: "snp", alt: "bp", "cM") |
plot |
Set to FALSE to not generate an LD plot |
LD-decay plot for in gen/database/cohorts selected individuals
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############ Modular Breeding Program Simulator #############
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################ Version: 1.4.87 (27-03-2020) ###############
######## To update to the most recent stable version: #######
## devtools::install_github('tpook92/MoBPS', subdir='pkg') ##
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################ Web-interface: www.mobps.de ################
### Extended documentation: www.github.com/tpook92/MoBPS ####
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