get.haplo: Derive haplotypes of selected individuals

In MoBPS: Modular Breeding Program Simulator

Description

Function to devide haplotypes of selected individuals

Usage

get.haplo(
  population,
  database = NULL,
  gen = NULL,
  cohorts = NULL,
  chromosomen = "all",
  export.alleles = FALSE,
  non.genotyped.as.missing = FALSE,
  use.id = FALSE
)

Arguments

population	Population list
database	Groups of individuals to consider for the export
gen	Quick-insert for database (vector of all generations to export)
cohorts	Quick-insert for database (vector of names of cohorts to export)
chromosomen	Beschraenkung der Haplotypen auf bestimmte Chromosomen (default: 1)
export.alleles	If TRUE export underlying alleles instead of just 012
non.genotyped.as.missing	Set to TRUE to replace non-genotyped markers with NA
use.id	Set to TRUE to use MoBPS ids instead of Sex_Nr_Gen based names (default: FALSE)

Value

Haplotype data for in gen/database/cohorts selected individuals

Examples

data(ex_pop)
haplo <- get.haplo(ex_pop, gen=2)

MoBPS documentation built on Nov. 9, 2021, 5:08 p.m.