API for MultiSEp
Predict Synthetic Lethality and Other Gene Dependency Relationships from Multiomics Data
| Global functions | |
|---|---|
| .binomialtest | Source code |
| .mts_axis_limits | Source code |
| .mts_axis_scale | Source code |
| .mts_combine_breaks | Source code |
| .mts_density_support | Source code |
| EM | Source code |
| EM.findk | Source code |
| Formatted_MUTimpactMatrix | Man page |
| GMM_CCL | Source code |
| GeneClusterProportions | Source code |
| MUT_impactMatrix | Man page |
| OneGMMBinomial | Source code |
| TwoGMMBinomial | Source code |
| align_gene_CCL | Source code |
| constructContingencyTable | Source code |
| depMapCRISPRscores_subset | Man page |
| depMapMUT_small | Man page |
| depMapMUT_subset | Man page |
| depMapTissue_subset | Man page |
| depMapXPR_small | Man page |
| depMapXPR_subset | Man page |
| discretise | Source code |
| e.step | Source code |
| generateGenePairs | Source code |
| init.em | Source code |
| kmeansplusplus | Source code |
| log_likelihood | Source code |
| m.step | Source code |
| mRes | Man page |
| mixModelClusters_depMapCRISPR | Man page |
| mixModelClusters_depMapXPR | Man page |
| mixModelClusters_vignette | Man page |
| mog.density | Source code |
| mts_Crispr | Man page Source code |
| mts_CrisprTS | Man page Source code |
| mts_GeneDepCrispr | Man page Source code |
| mts_GeneDepID | Man page Source code |
| mts_GeneDepMutation | Man page Source code |
| mts_InducedDependency | Man page Source code |
| mts_Mutation | Man page Source code |
| mts_clusterAvg | Man page Source code |
| mts_crisprPartition | Man page Source code |
| mts_formatMatrix | Man page Source code |
| mts_genepairsChunkGeneration | Man page Source code |
| mts_mixModelCluster | Man page Source code |
| mts_mixModelCluster_XPR | Man page Source code |
| mts_omics | Man page Source code |
| mts_pairwiseExpressionPlot | Man page Source code |
| mts_patternDetection | Man page Source code |
| mts_pickAxisTransform | Source code |
| mts_plotCRISPRGeneCluster | Man page Source code |
| mts_plotClusterDistribution | Man page Source code |
| mts_plotMutation | Man page Source code |
| mts_targetCoverageFromMutations | Man page Source code |
| mts_tests | Man page Source code |
| multisepCrisprList | Man page |
| multisepList | Man page |
| prefilterMixModelClusters | Source code |
| tmap.aic | Source code |
| tmap.bic | Source code |
