depMapMUT_subset: Example mutation data input matrix

In MultiSEp: Predict Synthetic Lethality and Other Gene Dependency Relationships from Multiomics Data

Example mutation data input matrix

Description

Discrete mutation values where row names correspond to genes and column names correspond to samples. Wild type denoted by 'WT' and mutations are indicated by amino acid changes.

Usage

data("depMapMUT_subset")

Format

A data frame with 132 observations (genes) across 1738 variables (cell lines).

Source

DepMap 2024Q2 \Sexpr[results=rd]{tools:::Rd_expr_doi("10.25452/figshare.plus.25880521.v1")}

References

Tsherniak A., Vazquez F., Montgomery P.G., Weir B.A., Kryukov G., Cowley G.S., Gill S., Harrington W.F., Pantel S., Krill-Burger J.M. et al. . Defining a cancer dependency map. Cell. 2017; 170:564-576. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.cell.2017.06.010")}

Examples

data(depMapMUT_subset)
depMapMUT_subset[1:10,1:10]

MultiSEp documentation built on Aug. 27, 2026, 5:07 p.m.