depMapCRISPRscores_subset: Example CRISPR score input matrix

In MultiSEp: Predict Synthetic Lethality and Other Gene Dependency Relationships from Multiomics Data

Example CRISPR score input matrix

Description

Log2 CRISPR scores where row names correspond to genes and column names correspond to samples.

Usage

data("depMapCRISPRscores_subset")

Format

A data frame with 50 observations (genes) across 1054 variables (cell lines).

Source

DepMap 2024Q2 \Sexpr[results=rd]{tools:::Rd_expr_doi("10.25452/figshare.plus.25880521.v1")}

References

Tsherniak A., Vazquez F., Montgomery P.G., Weir B.A., Kryukov G., Cowley G.S., Gill S., Harrington W.F., Pantel S., Krill-Burger J.M. et al. . Defining a cancer dependency map. Cell. 2017; 170:564-576. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.cell.2017.06.010")}

Examples

data(depMapCRISPRscores_subset)
depMapCRISPRscores_subset[1:10,1:10]

MultiSEp documentation built on Aug. 27, 2026, 5:07 p.m.