depMapXPR_subset: Example gene expression input matrix

In MultiSEp: Predict Synthetic Lethality and Other Gene Dependency Relationships from Multiomics Data

Example gene expression input matrix

Description

Log2 gene expression data for 50 observations (genes) across 1304 variables (cell lines).

Usage

data("depMapXPR_subset")

Format

A data frame where rownames correspond to genes and column names correspond to samples.

Source

DepMap 2024Q2 \Sexpr[results=rd]{tools:::Rd_expr_doi("10.25452/figshare.plus.25880521.v1")}

References

Tsherniak A., Vazquez F., Montgomery P.G., Weir B.A., Kryukov G., Cowley G.S., Gill S., Harrington W.F., Pantel S., Krill-Burger J.M. et al. . Defining a cancer dependency map. Cell. 2017; 170:564-576. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.cell.2017.06.010")}

Examples

data(depMapXPR_subset)
depMapXPR_subset[1:10,1:10]

MultiSEp documentation built on Aug. 27, 2026, 5:07 p.m.