Files in MultiSEp
Predict Synthetic Lethality and Other Gene Dependency Relationships from Multiomics Data
MD5
NAMESPACE
DESCRIPTION
R/mts_mixModelCluster.R
R/mts_genepairsChunkGeneration.R
R/mts_CrisprTS.R
R/mts_clusterAvg.R
R/mts_GeneDepMutation.R
R/mts_GeneDepCrispr.R
R/mts_targetCoverageFromMutations.R
R/mts_formatMatrix.R
R/mts_Crispr.R
R/mts_omics.R
R/mts_Mutation.R
R/mts_GeneDepID.R
R/mts_patternDetection.R
R/mts_inducedDependency.R
R/mts_plotClusterDistribution.R
R/mts_plotMutation.R
R/mts_mixModelCluster_XPR.R
R/mts_pairwiseExpressionPlot.R
R/subFunctions.R
R/mts_plotCRISPRGeneCluster.R
R/mts_crisprPartition.R
R/mts_tests.R
inst/doc/MultiSEpVignette.Rmd
inst/doc/MultiSEpVignette.R
inst/doc/MultiSEpVignette.pdf
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testthat/helper-mts.R
tests/testthat/test-mts.R
tests/testthat/test-demo.R
vignettes/MultiSEpVignette.Rmd
vignettes/figures/Figure1.tex
vignettes/figures/MultiSEp_SimpleFlow.png
vignettes/figures/Figure1.pdf
vignettes/figures/CoMMpassSLnetwork.png
data/depMapTissue_subset.rda
data/depMapXPR_subset.rda
data/multisepList.rda
data/depMapMUT_subset.rda
data/mixModelClusters_depMapXPR.rda
data/mixModelClusters_depMapCRISPR.rda
data/depMapCRISPRscores_subset.rda
data/mRes.rda
data/depMapXPR_small.rda
data/mixModelClusters_vignette.rda
data/multisepCrisprList.rda
data/MUT_impactMatrix.rda
data/depMapMUT_small.rda
data/Formatted_MUTimpactMatrix.rda
man/mixModelClusters_vignette.Rd
man/depMapCRISPRscores_subset.Rd
man/mRes.Rd
man/mts_InducedDependency.Rd
man/mts_crisprPartition.Rd
man/mts_Mutation.Rd
man/mts_plotMutation.Rd
man/mts_GeneDepCrispr.Rd
man/mts_formatMatrix.Rd
man/mts_patternDetection.Rd
man/multisepCrisprList.Rd
man/Formatted_MUTimpactMatrix.Rd
man/depMapXPR_subset.Rd
man/mts_plotClusterDistribution.Rd
man/mts_CrisprTS.Rd
man/depMapXPR_small.Rd
man/mts_GeneDepID.Rd
man/MUT_impactMatrix.Rd
man/mts_Crispr.Rd
man/depMapMUT_subset.Rd
man/mts_targetCoverageFromMutations.Rd
man/mts_GeneDepMutation.Rd
man/mts_ClusterAvg.Rd
man/depMapMUT_small.Rd
man/mts_tests.Rd
man/mixModelClusters_depMapXPR.Rd
man/mts_mixModelCluster.Rd
man/mts_omics.Rd
man/mts_plotCRISPRGeneCluster.Rd
man/mts_mixModelCluster_XPR.Rd
man/mts_pairwiseExpressionPlot.Rd
man/mts_genepairsChunkGeneration.Rd
man/depMapTissue_subset.Rd
man/mixModelClusters_depMapCRISPR.Rd
man/multisepList.Rd
