depMapTissue_subset: Example tissue data input matrix

In MultiSEp: Predict Synthetic Lethality and Other Gene Dependency Relationships from Multiomics Data

Example tissue data input matrix

Description

A data frame with 789 observations (samples) across 2 variables (tissues).

Usage

data("depMapTissue_subset")

Format

A data frame where column 1 corresponds to the sample ID and column 2 corresponds to the tissue value.

cell_line

a character vector

tissue

a character vector

Source

DepMap 2024Q2 \Sexpr[results=rd]{tools:::Rd_expr_doi("10.25452/figshare.plus.25880521.v1")}

References

Tsherniak A., Vazquez F., Montgomery P.G., Weir B.A., Kryukov G., Cowley G.S., Gill S., Harrington W.F., Pantel S., Krill-Burger J.M. et al. . Defining a cancer dependency map. Cell. 2017; 170:564-576. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.cell.2017.06.010")}

Examples

data(depMapTissue_subset)
depMapTissue_subset[1:10,]

MultiSEp documentation built on Aug. 27, 2026, 5:07 p.m.