PLS.GLM.biplot: The Partial Least Squares (PLS) biplot for Generalized Linear...

Description Usage Arguments Value Author(s) Examples

View source: R/AllFunctions.R

Description

Takes in a set of predictor variables and a set of response variables and produces a PLS biplot for the (univariate) GLMs.

Usage

1
2
PLS.GLM.biplot(X, y, algorithm = NULL, ax.tickvec.X = NULL,
  ax.tickvec.y = NULL, ax.tickvec.b = NULL, ...)

Arguments

X

A (NxP) predictor matrix

y

A (Nx1) response vector

algorithm

The PLS.GLM algorithm

ax.tickvec.X

tick marker length for each X-variable axis in the biplot

ax.tickvec.y

tick marker length for the y-variable axis in the biplot

ax.tickvec.b

(purple) tick marker length for the y-variable axis in the biplot

...

Other arguments. Currently ignored

Value

The PLS biplot of a GLM of D=[X y] with some parameters

Author(s)

Opeoluwa F. Oyedele and Sugnet Gardner-Lubbe

Examples

1
2
3
4
5
6
7
8
if(require(robustbase))
possum.mat #data matrix
y = as.matrix(possum.mat[,1], ncol=1)
dimnames(y) = list(paste("S", 1:nrow(possum.mat), seq=""), "Diversity")
X = as.matrix(possum.mat[,2:14], ncol=13)
dimnames(X) = list(paste("S", 1:nrow(possum.mat), seq=""), colnames(possum.mat[,2:14]))
PLS.GLM.biplot(X, y, algorithm=PLS.GLM, ax.tickvec.X=rep(5,ncol(X)),
 ax.tickvec.y=10, ax.tickvec.b=7)

Example output

Loading required package: robustbase
       Diversity Shrubs Stumps Stags Bark Habitat BAcacia E.regnans
  [1,]         3      6      1    12   29       9      31         1
  [2,]         2      5      0    15   12       2       4         1
  [3,]         1      7      0     6   26       2       8         1
  [4,]         2      6      0    14   16       8      16         1
  [5,]         3      5      0    16   11       8      20         0
  [6,]         2      3      0    16    6      10      31         1
  [7,]         3      6      0     9   10       8      16         0
  [8,]         2     13      0    20    4       8      17         1
  [9,]         0      5      0     7   13       3       0         1
 [10,]         0      8      0     4    9       1       8         1
 [11,]         1     11      1     6    3       2       8         1
 [12,]         1     16      0     5    3       6       9         1
 [13,]         0      8      0     4   11       1      11         0
 [14,]         4      9      0     6   14       7       0         1
 [15,]         2      4      0     4    8       1      25         1
 [16,]         3      9      0    10   13       7      16         1
 [17,]         1     11      0     6   17       1       7         1
 [18,]         3      8      0    11    8       9      23         1
 [19,]         3      4      0    11    7       8      19         1
 [20,]         1      8      0     4   12       9      13         1
 [21,]         2      1      0    16    5      10      21         1
 [22,]         2      3      1     8    9       8      23         0
 [23,]         2      3      0    10   15       1       0         0
 [24,]         3      5      0     9   16       2      16         0
 [25,]         4      3      0     7   16       8      20         0
 [26,]         2      4      0    10   14       2       5         0
 [27,]         1      5      0    15   18       0       1         1
 [28,]         1      2      0     5    4       9      33         0
 [29,]         2      6      0     7   22      10       3         0
 [30,]         3      1      0    10   11       2       4         1
 [31,]         3      5      0    11   11       9      17         0
 [32,]         3      3      0     8   17       7      13         1
 [33,]         2      5      0     8    9       7      13         1
 [34,]         3     21      1     3   23       4       3         1
 [35,]         4      5      0    14    9       8      12         1
 [36,]         0      3      0     5    5       4      13         1
 [37,]         2      4      0     8    6       9      20         1
 [38,]         0      3      0    14    7       8      15         1
 [39,]         2      2      0    11    9       6      15         1
 [40,]         1      6      0     2    7       6      11         1
 [41,]         0     11      0     1    7       3      11         1
 [42,]         0     11      1     1    5       1       1         1
 [43,]         3      5      0     7    8       8      27         1
 [44,]         0      5      0     2    9       2      15         1
 [45,]         2      3      0     7    5       7      15         1
 [46,]         2      5      0     7    5       5      23         1
 [47,]         1     10      0     1   11       3      17         1
 [48,]         2     15      0     6    9       3      13         1
 [49,]         1      8      0     8    5       1       9         1
 [50,]         1      5      0     6    8       3       4         1
 [51,]         2      9      0     6    7       7      16         1
 [52,]         1      7      0     5    5       1       2         1
 [53,]         1      8      0     6    9       7      22         1
 [54,]         0      3      0     0    3       1      17         1
 [55,]         1      0      0     0    6       1      12         1
 [56,]         0     11      0     2    7       4      11         1
 [57,]         0     11      1     0   10       1       3         1
 [58,]         1     10      1     1   15       2       4         1
 [59,]         3      8      0     3    8       2       7         1
 [60,]         1      6      0     2    6       2       0         1
 [61,]         1      4      0     2    4       2       3         0
 [62,]         2      2      0     6    7       7      39         1
 [63,]         1      5      0     3    7       5      11         1
 [64,]         2      2      0     4    6       6      23         0
 [65,]         3      1      0     3    6       4      28         1
 [66,]         1      8      0     4   10       7      19         1
 [67,]         0      1      0     5    6       6      17         0
 [68,]         2      1      0     2    7       5      24         0
 [69,]         1      0      0     3    5       6      20         0
 [70,]         2      2      0     4    4       8      20         0
 [71,]         1      7      0     4    5       4       5         1
 [72,]         1      5      0     2    7       3       3         1
 [73,]         1      3      0     2    8       3      19         1
 [74,]         2      0      0    10    6       7      19         1
 [75,]         5      7      0    16   14       7      19         1
 [76,]         1      3      1    10    7       8      20         1
 [77,]         1      6      0     4   12       6      16         0
 [78,]         1      0      0     3    4       3       5         1
 [79,]         1      4      0     2    7       2       3         1
 [80,]         1      8      0     2    9       3      12         1
 [81,]         0      4      0     2    8       4      11         1
 [82,]         1      5      0     2    8       3       3         1
 [83,]         1      1      0     3    4       4      17         0
 [84,]         1      6      0     1   14       4      17         1
 [85,]         0      4      1     6   12       7      16         1
 [86,]         0      8      0     8   18       5       7         1
 [87,]         0      4      0     2    5       3       0         1
 [88,]         2      2      0     4    6       2       0         0
 [89,]         3      7      0    12    5       6       4         1
 [90,]         0      7      0    13    5       6       3         1
 [91,]         2      1      0     3    7       7      21         1
 [92,]         4      2      0    14    6       9      20         1
 [93,]         2      7      0     2    5       4       7         1
 [94,]         2      1      0     4    9       6      24         1
 [95,]         0      5      0     0    9       3      21         1
 [96,]         1      0      0     2    5       3      15         1
 [97,]         0      2      0     3    5       5      13         0
 [98,]         2      1      0    14    3       7      19         0
 [99,]         2      1      0    29    6       4       1         1
[100,]         0      0      0     2    2       3      16         1
[101,]         0     14      0     4    0       1       0         1
[102,]         3      0      0     6    6       6      25         1
[103,]         1      8      0     3    9       5      16         0
[104,]         2      3      0     8    6       5      24         1
[105,]         1      3      0     4    5       5      13         1
[106,]         0      4      0     7    5       2       0         1
[107,]         3     15      0    20   18       4       0         1
[108,]         1      0      0     4    3       3       0         0
[109,]         0      2      0    11    3       4       1         0
[110,]         2      2      0     5    3       2       7         0
[111,]         1      0      0     1    3       2       1         0
[112,]         0      1      0     2    5       4       9         0
[113,]         2      1      0    27    7       6       7         0
[114,]         5      9      0    24   16       8      17         1
[115,]         2      5      0     9   10       6      20         1
[116,]         1     10      0    18   13       6       5         1
[117,]         2      3      0     3    5       5      15         0
[118,]         1      2      0    20    4       7      13         1
[119,]         4      2      0    25    8      10      23         1
[120,]         2      0      0     4    6       7      23         1
[121,]         0     11      0     4    4       4       5         1
[122,]         4     12      0    30   15       8       8         1
[123,]         5     10      0    24    9       8       4         1
[124,]         3      7      0     8    5       5       4         0
[125,]         0      1      1     4    7       6      16         0
[126,]         1      3      0     6    3       4       0         0
[127,]         0      2      0     5    4       5       9         1
[128,]         2      3      0     3    6       5       5         0
[129,]         0      1      0     5    4       5       4         0
[130,]         2      1      0     2    6       6      19         1
[131,]         0      7      0     3    5       2       0         1
[132,]         0      3      0     5    6       6      19         0
[133,]         2      6      0     7    5       4       4         1
[134,]         0      2      0     4    5       6      17         1
[135,]         0      1      0     5    3       4       8         0
[136,]         1      3      0     4    4       6       7         0
[137,]         0      6      0     4    7       5       4         1
[138,]         0     11      0     1    8       1       1         1
[139,]         3      9      0     4    5       3       0         1
[140,]         0      1      0    23    4       6       3         0
[141,]         3      1      0    25    4       7      15         0
[142,]         3      6      0    31   10       8      13         1
[143,]         1      5      0     0    4       2      23         1
[144,]         2      8      1     8    3       7      12         1
[145,]         0      6      0     4    5       2       0         1
[146,]         0      2      0     4    2       1       0         1
[147,]         1      5      1     1    0       2       0         1
[148,]         2      4      0     3    6       6      17         1
[149,]         1      4      1     1    5       3      25         1
[150,]         0      5      0     1    4       2      16         0
[151,]         0      4      0     4    6       2       0         1
       E.delegatensis E.nitens NW-NE NW-SE SE-SW SW-NW
  [1,]              0        0     0     0     0     1
  [2,]              0        0     0     0     1     0
  [3,]              0        0     1     0     0     0
  [4,]              0        0     0     0     0     1
  [5,]              1        0     0     0     1     0
  [6,]              0        0     0     1     0     0
  [7,]              1        0     0     0     0     1
  [8,]              0        0     0     0     1     0
  [9,]              0        0     0     0     0     1
 [10,]              0        0     0     0     1     0
 [11,]              0        0     0     0     1     0
 [12,]              0        0     0     0     0     1
 [13,]              1        0     1     0     0     0
 [14,]              0        0     0     0     1     0
 [15,]              0        0     0     1     0     0
 [16,]              0        0     0     0     1     0
 [17,]              0        0     0     0     0     1
 [18,]              0        0     0     1     0     0
 [19,]              0        0     0     1     0     0
 [20,]              0        0     0     1     0     0
 [21,]              0        0     0     0     1     0
 [22,]              1        0     0     0     1     0
 [23,]              1        0     1     0     0     0
 [24,]              1        0     0     1     0     0
 [25,]              0        1     0     1     0     0
 [26,]              1        0     0     1     0     0
 [27,]              0        0     0     0     1     0
 [28,]              1        0     0     0     1     0
 [29,]              0        1     0     1     0     0
 [30,]              0        0     0     0     1     0
 [31,]              1        0     0     0     1     0
 [32,]              0        0     0     1     0     0
 [33,]              0        0     0     0     1     0
 [34,]              0        0     0     0     1     0
 [35,]              0        0     0     0     1     0
 [36,]              0        0     0     0     1     0
 [37,]              0        0     0     1     0     0
 [38,]              0        0     0     0     0     1
 [39,]              0        0     0     1     0     0
 [40,]              0        0     0     1     0     0
 [41,]              0        0     1     0     0     0
 [42,]              0        0     0     1     0     0
 [43,]              0        0     0     1     0     0
 [44,]              0        0     0     0     1     0
 [45,]              0        0     0     1     0     0
 [46,]              0        0     0     1     0     0
 [47,]              0        0     0     0     1     0
 [48,]              0        0     0     1     0     0
 [49,]              0        0     1     0     0     0
 [50,]              0        0     0     0     0     1
 [51,]              0        0     1     0     0     0
 [52,]              0        0     0     1     0     0
 [53,]              0        0     0     1     0     0
 [54,]              0        0     0     0     1     0
 [55,]              0        0     0     1     0     0
 [56,]              0        0     1     0     0     0
 [57,]              0        0     0     0     0     1
 [58,]              0        0     1     0     0     0
 [59,]              0        0     0     0     1     0
 [60,]              0        0     0     0     1     0
 [61,]              0        1     1     0     0     0
 [62,]              0        0     1     0     0     0
 [63,]              0        0     0     1     0     0
 [64,]              1        0     0     0     0     1
 [65,]              0        0     1     0     0     0
 [66,]              0        0     0     0     1     0
 [67,]              1        0     0     1     0     0
 [68,]              1        0     0     0     1     0
 [69,]              1        0     1     0     0     0
 [70,]              1        0     1     0     0     0
 [71,]              0        0     0     1     0     0
 [72,]              0        0     1     0     0     0
 [73,]              0        0     0     0     0     1
 [74,]              0        0     1     0     0     0
 [75,]              0        0     0     0     1     0
 [76,]              0        0     1     0     0     0
 [77,]              0        1     0     0     1     0
 [78,]              0        0     0     1     0     0
 [79,]              0        0     0     1     0     0
 [80,]              0        0     1     0     0     0
 [81,]              0        0     0     0     0     1
 [82,]              0        0     0     1     0     0
 [83,]              1        0     0     1     0     0
 [84,]              0        0     0     1     0     0
 [85,]              0        0     0     0     0     1
 [86,]              0        0     0     1     0     0
 [87,]              0        0     1     0     0     0
 [88,]              0        1     0     1     0     0
 [89,]              0        0     0     0     1     0
 [90,]              0        0     0     0     1     0
 [91,]              0        0     0     1     0     0
 [92,]              0        0     1     0     0     0
 [93,]              0        0     1     0     0     0
 [94,]              0        0     0     1     0     0
 [95,]              0        0     0     0     1     0
 [96,]              0        0     0     0     1     0
 [97,]              0        1     0     0     0     1
 [98,]              1        0     0     0     1     0
 [99,]              0        0     0     1     0     0
[100,]              0        0     0     0     1     0
[101,]              0        0     0     0     1     0
[102,]              0        0     0     0     1     0
[103,]              0        1     1     0     0     0
[104,]              0        0     0     1     0     0
[105,]              0        0     0     1     0     0
[106,]              0        0     1     0     0     0
[107,]              0        0     0     1     0     0
[108,]              1        0     1     0     0     0
[109,]              1        0     0     1     0     0
[110,]              1        0     0     0     0     1
[111,]              1        0     0     0     1     0
[112,]              1        0     0     1     0     0
[113,]              1        0     0     0     1     0
[114,]              0        0     1     0     0     0
[115,]              0        0     1     0     0     0
[116,]              0        0     1     0     0     0
[117,]              0        1     0     1     0     0
[118,]              0        0     1     0     0     0
[119,]              0        0     0     0     0     1
[120,]              0        0     1     0     0     0
[121,]              0        0     1     0     0     0
[122,]              0        0     0     0     0     1
[123,]              0        0     0     0     1     0
[124,]              0        1     0     1     0     0
[125,]              0        1     0     0     1     0
[126,]              1        0     0     1     0     0
[127,]              0        0     0     1     0     0
[128,]              0        1     0     0     1     0
[129,]              1        0     0     0     0     1
[130,]              0        0     1     0     0     0
[131,]              0        0     0     1     0     0
[132,]              0        1     0     0     0     1
[133,]              0        0     0     0     0     1
[134,]              0        0     0     0     1     0
[135,]              1        0     0     0     0     1
[136,]              1        0     1     0     0     0
[137,]              0        0     0     0     0     1
[138,]              0        0     0     0     1     0
[139,]              0        0     0     0     1     0
[140,]              1        0     0     0     0     1
[141,]              1        0     0     0     1     0
[142,]              0        0     0     0     0     1
[143,]              0        0     1     0     0     0
[144,]              0        0     0     1     0     0
[145,]              0        0     0     0     0     1
[146,]              0        0     1     0     0     0
[147,]              0        0     1     0     0     0
[148,]              0        0     1     0     0     0
[149,]              0        0     0     1     0     0
[150,]              1        0     0     1     0     0
[151,]              0        0     0     0     1     0
$D.hat
       Shrubs    Stumps    Stags  Bark Habitat BAcacia E.regnans E.delegatensis
S 1      9.12  0.293636 19.74359 12.49   7.962   15.35     1.358        -0.0500
S 2      5.05  0.098973  6.23869  7.45   4.429   11.23     0.738         0.1924
S 3      4.35  0.044405  5.42246  7.29   4.441   11.65     0.613         0.2346
S 4      7.85  0.255184 13.87894 10.15   6.185   12.83     1.184         0.0256
S 5      5.25  0.031023 12.47801 10.31   6.892   15.61     0.702         0.1821
S 6      5.68  0.054494 13.74128 10.76   7.195   15.91     0.770         0.1560
S 7      6.51  0.208913  8.16749  7.90   4.501   10.52     0.995         0.1049
S 8      6.49  0.123187 14.25318 10.75   7.006   15.11     0.919         0.1073
S 9      6.40  0.270450  2.99249  5.51   2.431    6.81     1.036         0.1102
S 10     4.37  0.110162  0.86054  5.14   2.556    8.19     0.673         0.2319
S 11     5.32  0.204699  0.45647  4.66   1.922    6.49     0.860         0.1745
S 12     7.03  0.308177  4.57077  6.05   2.765    7.05     1.140         0.0723
S 13     2.90  0.018180 -2.44895  4.06   1.923    7.88     0.431         0.3198
S 14     5.38  0.104454  8.07645  8.21   5.021   12.12     0.780         0.1730
S 15     3.74  0.057825  0.34273  5.10   2.656    8.74     0.558         0.2701
S 16     5.81  0.097182 11.53560  9.69   6.226   14.07     0.822         0.1476
S 17     6.51  0.269427  3.83196  5.87   2.720    7.27     1.048         0.1036
S 18     5.40  0.064760 11.07532  9.60   6.241   14.34     0.748         0.1725
S 19     5.01  0.061785  8.66785  8.60   5.445   13.10     0.702         0.1953
S 20     4.95  0.062208  8.21873  8.41   5.291   12.86     0.696         0.1989
S 21     6.12  0.095813 13.68357 10.60   6.958   15.23     0.854         0.1299
S 22     5.41  0.106446  8.10813  8.21   5.021   12.10     0.784         0.1714
S 23     2.99  0.005542 -0.94601  4.73   2.497    8.87     0.429         0.3149
S 24     3.39 -0.013447  3.13338  6.52   3.973   11.34     0.457         0.2917
S 25     3.29 -0.092493  8.15606  8.90   6.084   15.25     0.378         0.2990
S 26     3.20 -0.004719  1.23015  5.68   3.285   10.19     0.444         0.3026
S 27     4.88  0.087695  5.90460  7.35   4.376   11.23     0.710         0.2026
S 28     4.62  0.034175  8.04097  8.43   5.379   13.20     0.635         0.2185
S 29     3.60 -0.090664 10.15451  9.73   6.749   16.29     0.414         0.2805
S 30     4.56  0.093985  3.32014  6.24   3.471    9.75     0.680         0.2210
S 31     5.05  0.033011 11.01220  9.68   6.387   14.80     0.682         0.1935
S 32     4.82  0.041546  8.84506  8.74   5.611   13.51     0.664         0.2068
S 33     5.39  0.100304  8.42366  8.37   5.160   12.37     0.777         0.1726
S 34     6.27  0.182244  8.51877  8.13   4.760   11.13     0.946         0.1191
S 35     5.86  0.100205 11.64888  9.73   6.248   14.08     0.830         0.1447
S 36     4.61  0.106079  2.75454  5.96   3.216    9.26     0.696         0.2181
S 37     4.96  0.063532  8.22119  8.40   5.285   12.84     0.698         0.1980
S 38     7.48  0.269985 10.33958  8.61   4.913   10.72     1.156         0.0468
S 39     4.64  0.056130  6.58819  7.74   4.773   12.09     0.656         0.2170
S 40     4.18  0.071257  2.34875  5.90   3.263    9.59     0.618         0.2440
S 41     3.93  0.092725 -0.90938  4.46   2.050    7.52     0.608         0.2584
S 42     4.16  0.167648 -4.72494  2.60   0.368    4.32     0.699         0.2433
S 43     4.96  0.057246  8.62720  8.60   5.455   13.15     0.692         0.1986
S 44     4.37  0.100451  1.52822  5.46   2.832    8.70     0.664         0.2323
S 45     4.49  0.067096  4.75941  6.93   4.098   10.94     0.649         0.2258
S 46     4.41  0.066650  4.23748  6.71   3.924   10.67     0.639         0.2306
S 47     4.74  0.104347  3.73611  6.38   3.557    9.81     0.708         0.2107
S 48     4.45  0.082979  3.33884  6.28   3.535    9.94     0.658         0.2279
S 49     3.85  0.092287 -1.36871  4.26   1.897    7.29     0.600         0.2627
S 50     6.27  0.279336  1.48774  4.84   1.877    5.87     1.030         0.1176
S 51     4.76  0.085000  5.29722  7.10   4.185   10.95     0.694         0.2096
S 52     3.52  0.083264 -2.94638  3.63   1.413    6.59     0.556         0.2822
S 53     4.84  0.063854  7.35706  8.04   4.992   12.37     0.685         0.2053
S 54     3.91  0.109121 -2.22262  3.85   1.521    6.57     0.621         0.2593
S 55     3.10  0.062400 -4.27696  3.14   1.073    6.21     0.491         0.3072
S 56     4.12  0.092484  0.44393  5.03   2.508    8.25     0.630         0.2469
S 57     6.65  0.363584 -2.04772  3.07   0.240    2.66     1.144         0.0940
S 58     4.57  0.153070 -0.93910  4.24   1.723    6.56     0.732         0.2199
S 59     4.42  0.112882  0.94441  5.17   2.570    8.19     0.680         0.2294
S 60     4.12  0.117586 -1.36170  4.18   1.767    6.89     0.652         0.2464
S 61     1.68 -0.041526 -6.41960  2.58   0.898    6.70     0.243         0.3926
S 62     4.79  0.058492  7.41829  8.08   5.040   12.49     0.675         0.2083
S 63     4.06  0.069418  1.65362  5.61   3.038    9.25     0.603         0.2512
S 64     5.77  0.206886  3.31117  5.85   2.873    7.97     0.911         0.1484
S 65     3.98  0.065812  1.38319  5.51   2.965    9.17     0.591         0.2559
S 66     5.39  0.100725  8.40049  8.36   5.150   12.35     0.777         0.1726
S 67     3.31  0.000241  1.59191  5.82   3.381   10.31     0.460         0.2963
S 68     3.80  0.031638  2.64593  6.16   3.571   10.37     0.542         0.2669
S 69     3.18  0.010380 -0.00426  5.11   2.789    9.30     0.455         0.3036
S 70     3.58  0.016018  2.26124  6.05   3.524   10.42     0.503         0.2803
S 71     3.92  0.081169 -0.08391  4.84   2.390    8.14     0.598         0.2587
S 72     3.62  0.085761 -2.46963  3.82   1.560    6.80     0.569         0.2765
S 73     6.16  0.267287  1.63669  4.95   1.990    6.13     1.008         0.1240
S 74     4.64  0.067982  5.67713  7.32   4.403   11.41     0.666         0.2172
S 75     6.15  0.088918 14.39420 10.92   7.234   15.72     0.852         0.1282
S 76     5.66  0.146598  6.91424  7.58   4.407   10.84     0.847         0.1559
S 77     3.49 -0.037842  5.54486  7.61   4.915   13.01     0.447         0.2865
S 78     3.41  0.070268 -2.78287  3.74   1.536    6.88     0.532         0.2892
S 79     3.43  0.072635 -2.83925  3.71   1.505    6.81     0.536         0.2881
S 80     3.92  0.081907 -0.14726  4.81   2.364    8.10     0.599         0.2588
S 81     6.23  0.273613  1.64235  4.93   1.959    6.04     1.021         0.1199
S 82     3.63  0.072171 -1.41273  4.31   1.989    7.58     0.558         0.2760
S 83     2.86  0.005158 -1.77418  4.38   2.219    8.44     0.415         0.3223
S 84     4.10  0.052703  3.17024  6.31   3.637   10.32     0.593         0.2488
S 85     7.77  0.336912  7.48878  7.18   3.599    8.15     1.246         0.0285
S 86     4.69  0.052612  7.17880  8.00   4.991   12.45     0.659         0.2141
S 87     3.49  0.090002 -3.68339  3.30   1.128    6.09     0.557         0.2843
S 88     1.71 -0.059608 -4.92909  3.27   1.496    7.78     0.231         0.3914
S 89     5.34  0.117947  6.82247  7.63   4.526   11.24     0.787         0.1752
S 90     5.38  0.118432  7.08774  7.74   4.613   11.37     0.792         0.1725
S 91     4.31  0.055757  4.34031  6.79   4.016   10.90     0.619         0.2367
S 92     5.25  0.070574  9.61372  8.97   5.718   13.47     0.736         0.1814
S 93     3.85  0.091571 -1.34161  4.28   1.910    7.31     0.599         0.2629
S 94     4.32  0.049677  4.85895  7.03   4.223   11.27     0.615         0.2361
S 95     4.48  0.097038  2.49489  5.88   3.176    9.27     0.673         0.2261
S 96     4.20  0.099622  0.43529  5.00   2.468    8.13     0.645         0.2423
S 97     4.61  0.142878  0.12499  4.72   2.135    7.29     0.728         0.2172
S 98     4.61  0.042025  7.36828  8.12   5.110   12.72     0.640         0.2193
S 99     5.10  0.067643  8.87096  8.66   5.482   13.12     0.717         0.1898
S 100    4.14  0.105702 -0.41751  4.62   2.148    7.58     0.643         0.2458
S 101    4.29  0.146142 -2.32738  3.68   1.291    5.93     0.695         0.2364
S 102    5.01  0.090880  6.59053  7.62   4.591   11.54     0.728         0.1946
S 103    2.63 -0.052961  0.83927  5.68   3.407   10.74     0.339         0.3370
S 104    4.42  0.059958  4.81500  6.98   4.154   11.08     0.635         0.2299
S 105    4.01  0.068807  1.37834  5.50   2.948    9.12     0.597         0.2540
S 106    3.64  0.089728 -2.62674  3.74   1.486    6.66     0.574         0.2753
S 107    5.45  0.069099 11.10824  9.60   6.230   14.28     0.757         0.1694
S 108    2.49  0.026627 -5.84483  2.60   0.733    5.94     0.392         0.3438
S 109    3.12  0.017744 -0.92775  4.70   2.439    8.69     0.455         0.3069
S 110    4.97  0.223219 -3.26523  3.03   0.568    4.22     0.837         0.1949
S 111    2.86  0.052298 -5.21172  2.78   0.811    5.87     0.455         0.3218
S 112    2.72  0.007600 -2.93723  3.89   1.814    7.78     0.401         0.3308
S 113    5.16  0.039056 11.32044  9.79   6.459   14.87     0.699         0.1869
S 114    6.19  0.062774 16.58272 11.93   8.110   17.29     0.834         0.1260
S 115    4.76  0.068325  6.50478  7.66   4.680   11.85     0.680         0.2099
S 116    5.36  0.079019  9.78871  9.01   5.732   13.43     0.756         0.1745
S 117    2.29 -0.064437 -0.61454  5.11   2.977   10.15     0.291         0.3570
S 118    5.17  0.078806  8.50618  8.47   5.301   12.75     0.734         0.1857
S 119    8.50  0.260032 17.93687 11.84   7.529   14.92     1.260        -0.0127
S 120    4.34  0.066210  3.81273  6.54   3.783   10.45     0.632         0.2346
S 121    4.08  0.102394 -0.56028  4.57   2.117    7.56     0.634         0.2492
S 122    8.89  0.272053 19.75542 12.57   8.079   15.69     1.314        -0.0362
S 123    6.54  0.113463 15.30001 11.22   7.411   15.82     0.917         0.1045
S 124    2.60 -0.050943  0.47399  5.52   3.273   10.52     0.337         0.3389
S 125    3.87  0.039536  2.55451  6.09   3.499   10.20     0.556         0.2626
S 126    2.86  0.020653 -2.92730  3.85   1.749    7.58     0.428         0.3223
S 127    3.94  0.071316  0.75958  5.23   2.726    8.75     0.592         0.2578
S 128    2.86 -0.023735  0.27748  5.35   3.064    9.98     0.389         0.3231
S 129    5.33  0.220342 -0.63484  4.15   1.471    5.66     0.874         0.1739
S 130    4.07  0.070732  1.65733  5.61   3.032    9.23     0.606         0.2503
S 131    3.52  0.084424 -3.07083  3.57   1.365    6.51     0.556         0.2825
S 132    5.02  0.138812  3.17317  6.02   3.185    8.97     0.770         0.1934
S 133    6.44  0.287655  1.99699  5.03   2.005    6.01     1.055         0.1078
S 134    4.84  0.101659  4.65662  6.77   3.881   10.34     0.718         0.2044
S 135    5.22  0.220428 -1.37066  3.84   1.222    5.27     0.862         0.1803
S 136    3.16  0.025668 -1.27001  4.53   2.281    8.39     0.465         0.3047
S 137    6.45  0.283322  2.40312  5.22   2.165    6.29     1.053         0.1071
S 138    4.20  0.122364 -1.19351  4.24   1.798    6.91     0.665         0.2418
S 139    4.48  0.125202  0.49893  4.94   2.354    7.76     0.698         0.2253
S 140    6.51  0.219215  7.41030  7.54   4.192    9.96     1.004         0.1049
S 141    5.22  0.041151 11.57070  9.89   6.533   14.97     0.707         0.1834
S 142    8.65  0.268744 18.31960 11.98   7.612   14.98     1.284        -0.0216
S 143    3.57  0.081307 -2.48599  3.83   1.578    6.87     0.559         0.2795
S 144    5.38  0.158536  4.20204  6.39   3.429    9.21     0.827         0.1718
S 145    5.93  0.290509 -1.65686  3.48   0.757    4.02     1.001         0.1376
S 146    3.17  0.092976 -6.06283  2.28   0.310    4.78     0.525         0.3030
S 147    3.92  0.179072 -7.15628  1.53  -0.512    2.85     0.683         0.2571
S 148    4.23  0.077515  2.22160  5.83   3.187    9.43     0.629         0.2411
S 149    4.48  0.140258 -0.56418  4.44   1.916    6.96     0.711         0.2249
S 150    2.62  0.013846 -4.03667  3.40   1.410    7.10     0.396         0.3363
S 151    4.16  0.113598 -0.84864  4.41   1.961    7.23     0.652         0.2445
       E.nitens   NW-NE    NW-SE  SE-SW    SW-NW Expected_Diversity
S 1    -0.30850 -0.0743 -0.29561 0.3880  0.98191             2.0691
S 2     0.06910  0.2393  0.29676 0.2713  0.19270             1.3380
S 3     0.15203  0.2829  0.42408 0.2822  0.01081             1.4266
S 4    -0.20923  0.0353 -0.13690 0.3179  0.78367             1.6087
S 5     0.11635  0.1854  0.36066 0.3917  0.06231             2.1656
S 6     0.07364  0.1530  0.29400 0.4004  0.15263             2.2177
S 7    -0.10016  0.1472  0.03653 0.2534  0.56294             1.1876
S 8    -0.02677  0.1058  0.14045 0.3790  0.37478             2.0552
S 9    -0.14662  0.1889 -0.02754 0.1513  0.68733             0.4851
S 10    0.09491  0.3131  0.34298 0.1874  0.15655             0.7717
S 11   -0.03471  0.2646  0.14612 0.1417  0.44759             0.4384
S 12   -0.21178  0.1436 -0.12879 0.1587  0.82652             0.5241
S 13    0.24962  0.4154  0.58282 0.1774 -0.17568             0.7299
S 14    0.04722  0.2087  0.26107 0.2960  0.23423             1.5027
S 15    0.17240  0.3509  0.46164 0.2018 -0.01440             0.8829
S 16    0.03072  0.1613  0.23150 0.3500  0.25725             1.8672
S 17   -0.15166  0.1770 -0.03630 0.1641  0.69525             0.5713
S 18    0.07980  0.1868  0.30682 0.3568  0.14950             1.9223
S 19    0.10257  0.2245  0.34459 0.3227  0.10828             1.6935
S 20    0.10544  0.2309  0.34954 0.3159  0.10366             1.6478
S 21    0.01606  0.1300  0.20641 0.3821  0.28141             2.0838
S 22    0.04418  0.2071  0.25640 0.2956  0.24090             1.4997
S 23    0.25576  0.4003  0.59024 0.2049 -0.19539             0.9177
S 24    0.25093  0.3504  0.57763 0.2729 -0.20090             1.3798
S 25    0.32315  0.3210  0.68113 0.3801 -0.38220             2.1216
S 26    0.25337  0.3737  0.58379 0.2412 -0.19874             1.1646
S 27    0.08752  0.2508  0.32523 0.2711  0.15292             1.3400
S 28    0.14618  0.2497  0.41180 0.3251  0.01342             1.7172
S 29    0.30515  0.2901  0.65115 0.4087 -0.34999             2.3135
S 30    0.09864  0.2857  0.34549 0.2304  0.13841             1.0650
S 31    0.12487  0.2061  0.37553 0.3693  0.04912             2.0146
S 32    0.12962  0.2335  0.38555 0.3338  0.04718             1.7738
S 33    0.05037  0.2059  0.26541 0.3029  0.22582             1.5499
S 34   -0.06543  0.1573  0.08897 0.2698  0.48398             1.3051
S 35    0.02560  0.1579  0.22356 0.3504  0.26823             1.8690
S 36    0.08602  0.2872  0.32701 0.2170  0.16883             0.9716
S 37    0.10356  0.2301  0.34668 0.3153  0.10785             1.6440
S 38   -0.20269  0.0796 -0.12238 0.2596  0.78319             1.2129
S 39    0.12656  0.2588  0.38380 0.2944  0.06301             1.5055
S 40    0.13805  0.3133  0.40676 0.2257  0.05428             1.0395
S 41    0.13306  0.3495  0.40335 0.1687  0.07843             0.6508
S 42    0.05731  0.3633  0.29293 0.0810  0.26280             0.0412
S 43    0.10925  0.2277  0.35482 0.3240  0.09352             1.7036
S 44    0.10339  0.3087  0.35504 0.2013  0.13495             0.8678
S 45    0.12528  0.2797  0.38421 0.2629  0.07317             1.2907
S 46    0.12994  0.2878  0.39197 0.2554  0.06486             1.2405
S 47    0.08088  0.2735  0.31791 0.2322  0.17640             1.0740
S 48    0.11395  0.2918  0.36878 0.2353  0.10415             1.1010
S 49    0.13722  0.3566  0.41028 0.1621  0.07098             0.6068
S 50   -0.14748  0.2062 -0.02691 0.1254  0.69526             0.3088
S 51    0.09599  0.2614  0.33892 0.2633  0.13642             1.2883
S 52    0.16207  0.3853  0.45015 0.1427  0.02179             0.4788
S 53    0.10978  0.2428  0.35726 0.3025  0.09741             1.5575
S 54    0.12018  0.3597  0.38542 0.1425  0.11245             0.4701
S 55    0.20164  0.4172  0.51212 0.1319 -0.06125             0.4120
S 56    0.12295  0.3295  0.38622 0.1887  0.09560             0.7853
S 57   -0.23848  0.2104 -0.16093 0.0379  0.91257            -0.3020
S 58    0.04856  0.3152  0.27471 0.1429  0.26724             0.4607
S 59    0.09045  0.3102  0.33608 0.1875  0.16619             0.7715
S 60    0.10164  0.3419  0.35610 0.1516  0.15039             0.5290
S 61    0.36411  0.5091  0.76227 0.1441 -0.41547             0.5226
S 62    0.11684  0.2450  0.36793 0.3057  0.08141             1.5802
S 63    0.14600  0.3247  0.41975 0.2162  0.03931             0.9765
S 64   -0.05982  0.2208  0.10421 0.1828  0.49226             0.7138
S 65    0.15315  0.3308  0.43099 0.2138  0.02442             0.9609
S 66    0.04995  0.2060  0.26481 0.3023  0.22683             1.5463
S 67    0.24361  0.3655  0.56847 0.2444 -0.17840             1.1850
S 68    0.19139  0.3317  0.48759 0.2467 -0.06600             1.1918
S 69    0.24170  0.3835  0.56761 0.2167 -0.16775             0.9958
S 70    0.21629  0.3464  0.52601 0.2476 -0.12007             1.2022
S 71    0.14291  0.3439  0.41729 0.1857  0.05314             0.7683
S 72    0.15488  0.3768  0.43859 0.1487  0.03593             0.5182
S 73   -0.13171  0.2109 -0.00309 0.1327  0.65946             0.3609
S 74    0.11695  0.2655  0.37035 0.2760  0.08810             1.3787
S 75    0.02026  0.1234  0.21188 0.3955  0.26921             2.1754
S 76   -0.00299  0.2018  0.18612 0.2612  0.35097             1.2571
S 77    0.26657  0.3285  0.59834 0.3186 -0.24544             1.6939
S 78    0.17906  0.3904  0.47581 0.1506 -0.01679             0.5353
S 79    0.17617  0.3899  0.47148 0.1488 -0.01012             0.5224
S 80    0.14237  0.3444  0.41654 0.1845  0.05461             0.7597
S 81   -0.14064  0.2072 -0.01669 0.1301  0.67937             0.3419
S 82    0.16581  0.3689  0.45387 0.1699  0.00732             0.6648
S 83    0.26269  0.4129  0.60186 0.1928 -0.20757             0.8370
S 84    0.15776  0.3117  0.43571 0.2456  0.00699             1.1783
S 85   -0.27465  0.0835 -0.22829 0.1895  0.95527             0.7234
S 86    0.12694  0.2520  0.38362 0.3046  0.05980             1.5748
S 87    0.15830  0.3925  0.44536 0.1290  0.03315             0.3850
S 88    0.37799  0.4973  0.78149 0.1737 -0.45241             0.7261
S 89    0.03795  0.2196  0.24858 0.2719  0.25992             1.3369
S 90    0.03522  0.2154  0.24408 0.2756  0.26496             1.3616
S 91    0.14444  0.2925  0.41392 0.2615  0.03207             1.2844
S 92    0.08292  0.2053  0.31346 0.3329  0.14837             1.7598
S 93    0.13802  0.3566  0.41146 0.1628  0.06909             0.6117
S 94    0.14897  0.2883  0.42016 0.2717  0.01987             1.3546
S 95    0.10072  0.2962  0.34973 0.2170  0.13705             0.9740
S 96    0.11299  0.3255  0.37107 0.1856  0.11787             0.7623
S 97    0.05465  0.3052  0.28263 0.1628  0.24938             0.5975
S 98    0.14035  0.2552  0.40379 0.3118  0.02912             1.6264
S 99    0.09277  0.2181  0.32941 0.3232  0.12934             1.6954
S 100   0.11104  0.3347  0.36919 0.1705  0.12564             0.6592
S 101   0.06900  0.3399  0.30764 0.1254  0.22713             0.3449
S 102   0.07775  0.2387  0.30947 0.2798  0.17199             1.3979
S 103   0.32413  0.4074  0.69204 0.2558 -0.35517             1.2757
S 104   0.13488  0.2830  0.39875 0.2667  0.05153             1.3183
S 105   0.14898  0.3292  0.42465 0.2124  0.03375             0.9512
S 106   0.15053  0.3769  0.43216 0.1447  0.04629             0.4903
S 107   0.07346  0.1839  0.29712 0.3555  0.16354             1.9121
S 108   0.26398  0.4612  0.60905 0.1239 -0.19417             0.3680
S 109   0.23849  0.3930  0.56391 0.2000 -0.15690             0.8816
S 110  -0.03199  0.3095  0.15507 0.0791  0.45636             0.0131
S 111   0.22304  0.4370  0.54591 0.1224 -0.10530             0.3509
S 112   0.26825  0.4288  0.61181 0.1747 -0.21532             0.7144
S 113   0.11400  0.1980  0.35859 0.3713  0.07216             2.0263
S 114   0.04007  0.1058  0.23924 0.4387  0.21622             2.4729
S 115   0.11008  0.2530  0.35882 0.2881  0.10014             1.4594
S 116   0.06971  0.1978  0.29312 0.3319  0.17716             1.7509
S 117   0.35146  0.4357  0.73554 0.2392 -0.41041             1.1675
S 118   0.07991  0.2171  0.31030 0.3131  0.15951             1.6248
S 119  -0.24736 -0.0280 -0.20019 0.3756  0.85262             1.9948
S 120   0.13384  0.2943  0.39845 0.2494  0.05785             1.1999
S 121   0.11679  0.3387  0.37813 0.1698  0.11337             0.6553
S 122  -0.27828 -0.0621 -0.24961 0.3973  0.91440             2.1372
S 123  -0.02120  0.0958  0.14759 0.3985  0.35816             2.1888
S 124   0.32411  0.4117  0.69249 0.2495 -0.35368             1.2333
S 125   0.18100  0.3285  0.47190 0.2421 -0.04245             1.1582
S 126   0.24984  0.4211  0.58377 0.1693 -0.17426             0.6749
S 127   0.15024  0.3369  0.42736 0.2023  0.03342             0.8822
S 128   0.28743  0.3989  0.63688 0.2352 -0.27098             1.1294
S 129  -0.04825  0.2719  0.12691 0.1190  0.48219             0.2820
S 130   0.14413  0.3239  0.41690 0.2157  0.04348             0.9728
S 131   0.16140  0.3865  0.44929 0.1404  0.02378             0.4629
S 132   0.03683  0.2621  0.25156 0.2094  0.27701             0.9114
S 133  -0.16309  0.1938 -0.05134 0.1294  0.72809             0.3334
S 134   0.07755  0.2613  0.31165 0.2468  0.18017             1.1733
S 135  -0.04269  0.2828  0.13632 0.1082  0.47271             0.2090
S 136   0.23000  0.3935  0.55143 0.1916 -0.13658             0.8232
S 137  -0.16014  0.1903 -0.04738 0.1372  0.71988             0.3869
S 138   0.09364  0.3367  0.34369 0.1520  0.16760             0.5308
S 139   0.07658  0.3098  0.31554 0.1758  0.19891             0.6893
S 140  -0.10878  0.1525  0.02438 0.2379  0.58521             1.0808
S 141   0.10913  0.1931  0.35084 0.3741  0.08204             2.0445
S 142  -0.26255 -0.0388 -0.22381 0.3776  0.88500             2.0056
S 143   0.16127  0.3796  0.44833 0.1503  0.02175             0.5304
S 144   0.00119  0.2353  0.19597 0.2162  0.35247             0.9519
S 145  -0.13889  0.2467 -0.00979 0.0745  0.68864            -0.0367
S 146   0.17249  0.4262  0.47003 0.0928  0.01096             0.1406
S 147   0.06004  0.3929  0.30021 0.0404  0.26641            -0.2346
S 148   0.13025  0.3116  0.39503 0.2212  0.07222             1.0075
S 149   0.06365  0.3170  0.29722 0.1538  0.23204             0.5375
S 150   0.26796  0.4416  0.61280 0.1559 -0.21030             0.5864
S 151   0.10328  0.3366  0.35793 0.1608  0.14468             0.5921

$bvec
               Diversity
Shrubs           0.02590
Stumps          -0.06712
Stags            0.21395
Bark             0.15296
Habitat          0.19508
BAcacia          0.10622
E.regnans       -0.01579
E.delegatensis  -0.00928
E.nitens         0.03949
NW-NE           -0.00115
NW-SE            0.03892
SE-SW            0.06605
SW-NW           -0.12792

PLSbiplot1 documentation built on May 2, 2019, 9:41 a.m.