Files in ProActive
Detect Elevations and Gaps in Mapped Sequencing Read Coverage
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/sysdata.rda
R/FullElevGapFunctions.R
R/patternMatcher.R
R/bestMatchListFunctions.R
R/sampleMetagenomeResults.R
R/geneAnnotationPlot.R
R/noPattern.R
R/partialElevGapFunctions.R
R/patternBuilder.R
R/ProActiveDetect.R
R/plotProActiveResults.R
R/sampleMetagenomePileup.R
R/reformatInputFunctions.R
R/collectBestMatchInfo.R
R/GPsInElevGaps.R
R/sampleGenomePileup.R
R/sampleGenomegffTSV.R
R/sampleMetagenomegffTSV.R
R/geneAnnotationSearch.R
R/chunkingFunctions.R
R/ProActive-package.R
inst/doc/ProActiveVignette.R
inst/doc/ProActiveVignette.html
inst/doc/ProActiveVignette.Rmd
inst/script/GenerateSampleMetagenomePileup_gffTSV.txt
inst/script/GenerateSampleGenomePileup_gffTSV.txt
inst/figures/ProActiveLogo.png
build/vignette.rds
tests/testthat.R
tests/testthat/test-testProActive.R
tests/testthat/Rplots.pdf
vignettes/ProActiveVignette.Rmd
data/sampleMetagenomePileup.rda
data/sampleMetagenomegffTSV.rda
data/sampleGenomegffTSV.rda
data/sampleMetagenomeResults.rda
data/sampleGenomePileup.rda
man/removeNoPatterns.Rd
man/ProActive-package.Rd
man/geneAnnotationSearch.Rd
man/sampleMetagenomegffTSV.Rd
man/noPattern.Rd
man/geneAnnotationPlot.Rd
man/linkChunks.Rd
man/GPsInElevGaps.Rd
man/sampleMetagenomePileup.Rd
man/contigChunks.Rd
man/patternBuilder.Rd
man/pileupFormatter.Rd
man/classifSumm.Rd
man/partialElevGap.Rd
man/sampleGenomePileup.Rd
man/patternTranslator.Rd
man/fullElevGapShrink.Rd
man/sampleMetagenomeResults.Rd
man/plotProActiveResults.Rd
man/patternMatcher.Rd
man/fullElevGap.Rd
man/ProActiveDetect.Rd
man/collectBestMatchInfo.Rd
man/elevOrGapClassif.Rd
man/changewindowSize.Rd
man/genomeChunks.Rd
man/sampleGenomegffTSV.Rd
man/partialElevGapShrink.Rd
man/figures/logo.png
