R/sampleMetagenomegffTSV.R

In ProActive: Detect Elevations and Gaps in Mapped Sequencing Read Coverage

#' sampleMetagenomegffTSV
#'
#' A subset of gene annotations associated with the metagenome in the sampleMetagenomePileup
#' Report...
#'
#' @keywords internal
#' @format ## `sampleMetagenomegffTSV`
#' A data frame with 467 rows and 9 columns:
#' \describe{
#'   \item{V1}{seqid}
#'   \item{V2}{source}
#'   \item{V3}{type}
#'   \item{V4}{start}
#'   \item{V5}{end}
#'   \item{V6}{score}
#'   \item{V7}{strand}
#'   \item{V8}{phase}
#'   \item{V9}{attributes}
#' }
#' @details This is a standard .gff file format. The .gff file was generated by
#' running PROKKA with default parameters on the metagenome assembly
#' associated with the sampleMetagenomePileup in the ProActive package.
#' The gff was subset to only include the data associated with the
#' contigs in the sample data subset.
#' @source
#' <https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-020-00935-5>
"sampleMetagenomegffTSV"