QTLRel: Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees

This software provides tools for quantitative trait mapping in populations such as advanced intercross lines where relatedness among individuals should not be ignored. It can estimate background genetic variance components, impute missing genotypes, simulate genotypes, perform a genome scan for putative quantitative trait loci (QTL), and plot mapping results. It also has functions to calculate identity coefficients from pedigrees, especially suitable for pedigrees that consist of a large number of generations, or estimate identity coefficients from genotypic data in certain circumstances.

AuthorRiyan Cheng <riyan.cheng@anu.edu.au>
Date of publication2015-11-12 08:42:52
MaintainerRiyan Cheng <riyan.cheng@anu.edu.au>
LicenseGPL (>= 2)
Version0.2-15

View on CRAN

Functions

aicVC Man page
blup Man page
cic Man page
estVC Man page
fv Man page
gdatF8 Man page
genMatrix Man page
genoImpute Man page
genoPos Man page
genoProb Man page
genoSim Man page
gls Man page
gmapF8 Man page
gmF8 Man page
gvar Man page
hapSim Man page
ibs Man page
kinship Man page
lodci Man page
mAIC Man page
mAIC.HK Man page
miscEx Man page
nullSim Man page
pdatF8 Man page
pedF8 Man page
pedRecode Man page
pkolm Man page
plot Man page
plotit Man page
plot.scanOne Man page
plot.scanTwo Man page
qkolm Man page
qqPlot Man page
qtl2rel Man page
qtlVar Man page
rel2qtl Man page
rem Man page
scanOne Man page
scanTwo Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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