qqplot: Quantile-Quantile Plots

In QTLRel: Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees

Quantile-Quantile Plots

Description

Quantile-Quantile Plots With the Ability to Draw Confidence Bands.

Usage

qqPlot(y, x = "norm", ...,
   type = "p", xlim = NULL, ylim = NULL,
   xlab = if(is.numeric(x)) deparse(substitute(x)) else x,
   ylab = deparse(substitute(y)),main="Q-Q Plot",
   col = 1, lty = 2, lwd = 1, pch = 1, cex = 0.7, plot.it = TRUE,
   confidence = .95, qqline = c("observed","expected","none"),
   add = FALSE)

Arguments

y	A numeric vector of data values.
x	Either a numeric vector of data values, or a character string naming a distribution function such as "norm".
...	Parameters passed to the distribution specified by x (if non-numerical).
type	1-character string giving the type of plot desired.
xlim	The x limits.
ylim	The y limits.
xlab	A label for the x axis.
ylab	A label for the y axis.
main	A main title for the plot.
col	Color for points and lines.
lty	Line type.
lwd	Line width.
pch	Plotting character for points.
cex	Factor for expanding the size of plotted symbols.
plot.it	Whether or not to draw a plot. if plotting, points outside the confidence bands will be indicated by different a color.
confidence	Confidence level for the confidence band, or FALSE for no band.
qqline	Whether or not to draw a reference line. if "observed", the line passes through the first and third observed quartiles; if "expected", the point (x,y) is expected to fall on the line if x and y follow the same distribution; if "none", no reference line is drawn.
add	Add to an existing plot if true.

Details

If x is numeric, a two-sample test of the null hypothesis that x and y were drawn from the same continuous distribution is performed. Alternatively, x can be a character string naming a continuous distribution function. In such a case, a one-sample test is carried out of the null that y was draw from distribution x with parameters specified by "...".

Value

x	Quantiles of x
y	Quantiles of y
lower, upper	Lower and upper limits if confidence is specified

References

George Marsaglia, Wai Wan Tsang and Jingbo Wang (2003), Evaluating Kolmogorov's distribution. Journal of Statistical Software 8 (18): 1-4.

Vijayan N. Nair (1982). Q-Q plots with confidence bands for comparing several populations.

William J. Conover (1971). Practical Nonparametric Statistics. New York: John Wiley & Sons.

See Also

ks.test.

Examples

## Not run: 
par(mfrow=c(1,2))
x<- rnorm(200, mean=0.7,sd=2); y<- rnorm(200, sd=2)
qqPlot(y,x,qqline="exp")
qqPlot(y=y,x="norm",sd=2)
ks.test(x,y)

## End(Not run)

QTLRel documentation built on Aug. 9, 2023, 1:07 a.m.