ibs: Estimate Jacquard condensed identity coefficients
In QTLRel: Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees
ibs R Documentation
Estimate Jacquard condensed identity coefficients
Description
Estimate Jacquard condensed identity coefficients by identity-by-state (IBS) from genotypic data.
Usage
ibs(x)
Arguments
x
Genotype data with genotypes ("AA", "AB", "BB", or, 1, 2, 3) and without missing data, or probabilities for these genotypes (e.g., obtained by using genoProb). In case of genotype data, rows represent individuals and columns represent SNPs.
Value
A matrix G with G[,j] being the j-th Jacquard identity coefficients.
Note
Currently only support the two-allele data.
See Also
genMatrix
QTLRel documentation built on Aug. 9, 2023, 1:07 a.m.
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| ibs | R Documentation |
Estimate Jacquard condensed identity coefficients
Description
Estimate Jacquard condensed identity coefficients by identity-by-state (IBS) from genotypic data.
Usage
ibs(x)
Arguments
x |
Genotype data with genotypes ("AA", "AB", "BB", or, 1, 2, 3) and without missing data, or probabilities for these genotypes (e.g., obtained by using |
Value
A matrix G with G[,j] being the j-th Jacquard identity coefficients.
Note
Currently only support the two-allele data.
See Also
genMatrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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