qtl2rel: Convert data from R/qtl to QTLRel format
In QTLRel: Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees
qtl2rel R Documentation
Convert data from R/qtl to QTLRel format
Description
Convert the data for a QTL mapping experiment from the R/qtl format
(see http://www.rqtl.org) to that used by QTLRel.
Usage
qtl2rel(cross)
Arguments
cross
An object of class "cross", as defined by the R/qtl package
Details
The input cross must by an intercross (class "f2").
Simple pedigree information is created, assuming the data are from a
standard intercross.
Value
A list with four components: "ped" (pedigree information),
"gdat" (genotype data), "pdat" (phenotype data), and
"gmap" (genetic map), in the formats used by QTLRel.
Author(s)
Karl W Broman, kbroman@biostat.wisc.edu
See Also
rel2qtl
Examples
library(qtl)
data(listeria)
listeria <- listeria[as.character(1:19),]
reldat <- qtl2rel(listeria)
QTLRel documentation built on Aug. 9, 2023, 1:07 a.m.
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| qtl2rel | R Documentation |
Convert data from R/qtl to QTLRel format
Description
Convert the data for a QTL mapping experiment from the R/qtl format (see http://www.rqtl.org) to that used by QTLRel.
Usage
qtl2rel(cross)
Arguments
cross |
An object of class |
Details
The input cross must by an intercross (class "f2").
Simple pedigree information is created, assuming the data are from a standard intercross.
Value
A list with four components: "ped" (pedigree information),
"gdat" (genotype data), "pdat" (phenotype data), and
"gmap" (genetic map), in the formats used by QTLRel.
Author(s)
Karl W Broman, kbroman@biostat.wisc.edu
See Also
rel2qtl
Examples
library(qtl)
data(listeria)
listeria <- listeria[as.character(1:19),]
reldat <- qtl2rel(listeria)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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