rel2qtl: Convert data from QTLRel to R/qtl format
In QTLRel: Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees
rel2qtl R Documentation
Convert data from QTLRel to R/qtl format
Description
Convert the data for a QTL mapping experiment from the QTLRel format
to that used by R/qtl (http://www.rqtl.org).
Usage
rel2qtl(gdat, pdat, gmap)
Arguments
gdat
Genotype data
pdat
Phenotype data
gmap
Genetic map
Details
Pedigree information is ignored, and X chromosome data is omitted.
The data are treated as an intercross.
Value
A cross object for the R/qtl package (http://www.rqtl.org).
Author(s)
Karl W Broman, kbroman@biostat.wisc.edu
See Also
qtl2rel
Examples
data(miscEx)
f8 <- rel2qtl(gdatF8, pdatF8, gmapF8)
summary(f8)
QTLRel documentation built on Aug. 9, 2023, 1:07 a.m.
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| rel2qtl | R Documentation |
Convert data from QTLRel to R/qtl format
Description
Convert the data for a QTL mapping experiment from the QTLRel format to that used by R/qtl (http://www.rqtl.org).
Usage
rel2qtl(gdat, pdat, gmap)
Arguments
gdat |
Genotype data |
pdat |
Phenotype data |
gmap |
Genetic map |
Details
Pedigree information is ignored, and X chromosome data is omitted.
The data are treated as an intercross.
Value
A cross object for the R/qtl package (http://www.rqtl.org).
Author(s)
Karl W Broman, kbroman@biostat.wisc.edu
See Also
qtl2rel
Examples
data(miscEx)
f8 <- rel2qtl(gdatF8, pdatF8, gmapF8)
summary(f8)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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