Files in Quartet
Comparison of Phylogenetic Trees Using Quartet and Split Measures
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/TernaryPoints.R
R/VisualizeQuartets.R
R/PartitionDistance.R
R/data.R
R/ResolvedQuartets.R
R/Metrics.R
R/Quartet-package.R
R/zzz.R
R/CompareQuartets.R
R/tqDist.r
R/QuartetDistance.R
src/HDTFactory.cpp
src/rooted_tree.h
src/HDTCountingCCToC.cpp
src/hdt_factory.h
src/HDTListUtils.cpp
src/QuartetDistanceCalculator.cpp
src/EdgeParser.cpp
src/RootedTreeFactory.cpp
src/RcppExports.cpp
src/TripletDistanceCalculator.h
src/util.h
src/triplet_calc.h
src/AbstractDistanceCalculator.h
src/RootedTree.cpp
src/rTripletDist.cpp
src/memory_allocator.h
src/HDTCountingIGToC.cpp
src/rQuartetDist.cpp
src/newick_parser.h
src/HDT.cpp
src/quartet_calc.h
src/HDTCountingG.cpp
src/AllQuartets.cpp
src/rooted_tree_factory.h
src/templated_linked_list.h
src/HDTCountingCTransform.cpp
src/QuartetDistanceCalculator.h
src/counting_linked_list.h
src/counting_linked_list_num_only.h
src/NewickParser.cpp
src/hdt.h
src/unrooted_tree.h
src/int_stuff.h
src/HDTCountingLeaf.cpp
src/TripletDistanceCalculator.cpp
src/AbstractDistanceCalculator.cpp
src/int_stuff.cpp
src/edge_parser.h
inst/Get_stuck_in.md
inst/preamble.tex
inst/REFERENCES.bib
inst/CITATION
inst/WORDLIST
inst/apa-old-doi-prefix.csl
inst/doc/Using-Quartet.html
inst/doc/Quartet-Distance.R
inst/doc/Quartet-Distance.pdf
inst/doc/Using-Quartet.R
inst/doc/Using-Quartet.Rmd
inst/doc/Quartet-Distance.Rmd
inst/trees/two_quartets.new
inst/trees/unresolved_list.new
inst/trees/unresolved1.new
inst/trees/quartet_unresolved.new
inst/trees/five_trees.new
inst/trees/tree_ab-c.new
inst/trees/test_tree3.new
inst/trees/test_tree4.new
inst/trees/none.new
inst/trees/quartet2.new
inst/trees/two_trees.new
inst/trees/all_quartets.new
inst/trees/one_quartet_twice.new
inst/trees/test_tree1.new
inst/trees/test_tree2.new
inst/trees/quartet1.new
inst/trees/unresolved2.new
inst/trees/tree_ac-b.new
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testthat/test-rQuartetDist.cpp.R
tests/testthat/test-AllQuartets.cpp.R
tests/testthat/test-1-tqdist.R
tests/testthat/test-QuartetStates.R
tests/testthat/test-NewickParser.cpp.R
tests/testthat/test-ResolvedQuartets.R
tests/testthat/test-CompareQuartets.R
tests/testthat/test-ZZZ-Metrics.R
tests/testthat/test-VisualizeQuartet.R
tests/testthat/test-TernaryPoints.R
tests/testthat/test-PartitionDistance.R
tests/testthat/test-QuartetDistance.R
tests/testthat/_snaps/VisualizeQuartet/vq-tworow.svg
tests/testthat/_snaps/VisualizeQuartet/vq-label.svg
tests/testthat/_snaps/VisualizeQuartet/vq-size.svg
tests/testthat/_snaps/QuartetDistance/plotquartet-gain.svg
tests/testthat/_snaps/QuartetDistance/plotquartet.svg
tests/testthat/_snaps/QuartetDistance/plotquartet-one-star.svg
tests/figs/deps.txt
tests/figs/vq-tworow.svg
tests/figs/vq-label.svg
tests/figs/vq-size.svg
tests/figs/quartetdistance-r/plotquartet-gain.svg
tests/figs/quartetdistance-r/plotquartet.svg
tests/figs/quartetdistance-r/plotquartet-one-star.svg
vignettes/Using-Quartet.Rmd
vignettes/Quartet-Distance.Rmd
data/sq_trees.rda
man/QuartetState.Rd
man/TQFile.Rd
man/Distances.Rd
man/PlotQuartet.Rd
man/TQDist.Rd
man/SymmetricDifferenceLineEnds.Rd
man/PairSharedSplitStatus.Rd
man/QuartetPoints.Rd
man/CompareQuartetsMulti.Rd
man/Quartet-package.Rd
man/dot-StatusToMatrix.Rd
man/QuartetStatus.Rd
man/VisualizeQuartets.Rd
man/CompareSplits.Rd
man/PairSharedQuartetStatus.Rd
man/SimilarityMetrics.Rd
man/CompareQuartets.Rd
man/dot-CheckSize.Rd
man/tqdist_QuartetDistance.Rd
man/ValidateQuartetFile.Rd
man/SplitStatus.Rd
man/ResolvedQuartets.Rd
man/dot-AddSlice.Rd
man/dot-NormalizeStatus.Rd
man/AllQuartets.Rd
man/sq_trees.Rd
