transpose.LCA: Transpose OTU Tables With LCA Annotation For Each OTU
In RAM: R for Amplicon-Sequencing-Based Microbial-Ecology
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Similar to transpose.OTU, but each OTU is
annotated by the lowest common ancestor it was assigned to.
Usage
1
Arguments
data
The OTU tables to be transposed.
See also RAM.input.formatting.
Value
Returns a transposed OTU table, but the colname is formatted
as: LCA_otuID.
Author(s)
Wen Chen.
Examples
1
2
3
4
5
Example output
Loading required package: vegan
Loading required package: permute
Loading required package: lattice
This is vegan 2.5-4
Loading required package: ggplot2
RAM documentation built on May 2, 2019, 3:04 p.m.
R Package Documentation
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Description Usage Arguments Value Author(s) Examples
Description
Similar to transpose.OTU, but each OTU is
annotated by the lowest common ancestor it was assigned to.
Usage
1 |
Arguments
data |
The OTU tables to be transposed.
See also |
Value
Returns a transposed OTU table, but the colname is formatted as: LCA_otuID.
Author(s)
Wen Chen.
Examples
1 2 3 4 5 |
Example output
Loading required package: vegan
Loading required package: permute
Loading required package: lattice
This is vegan 2.5-4
Loading required package: ggplot2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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