Rcolombos: Interface to Colombos Compendia using the Exposed REST API

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Provides programmatic access to Colombos, a web based interface for exploring and analyzing comprehensive organism-specific cross-platform expression compendia of bacterial organisms.

Author
Paolo Sonego <paolo.sonego@fmach.it>
Date of publication
2015-11-02 11:51:15
Maintainer
Paolo Sonego <paolo.sonego@fmach.it>
License
GPL-3
Version
2.0.2
URLs

View on CRAN

Man pages

advanced_search
This method mimics the advanced_search functionality of...
advanced_search_by_both
Accessory function allowing the advanced_search by both g_ids...
advanced_search_by_contrasts
Accessory function allowing the advanced_search by...
advanced_search_by_genes
Accessory function allowing the advanced_search by gene_ids,...
getCompendium
This method allows to download/import the full compendium for...
get_contrast_annotations
This method allows to retrieve all the annotations for the...
listAnnotationTypes
This method takes as parameter a string (the nickname of an...
listContrasts
This method takes as parameter a single string, representing...
listEntities
This method takes a string containing the nickname for the...
listGenes
This method takes as parameter a single string, representing...
listOrganisms
Returns a character vector corresponding to the currently...
parseCompendium
This method allows importing the full compendium for the...
quick_search
This method mimics the quick_search functionality of...
Rcolombos
Interface to Colombos Compendia using the Exposed REST API
switchVersion
Select the COLOMBOS REST API version to be used for...

Files in this package

Rcolombos
Rcolombos/NAMESPACE
Rcolombos/R
Rcolombos/R/Rcolombos.R
Rcolombos/R/utilities.R
Rcolombos/R/zzz.R
Rcolombos/README.md
Rcolombos/MD5
Rcolombos/DESCRIPTION
Rcolombos/man
Rcolombos/man/advanced_search_by_genes.Rd
Rcolombos/man/listContrasts.Rd
Rcolombos/man/listGenes.Rd
Rcolombos/man/listEntities.Rd
Rcolombos/man/switchVersion.Rd
Rcolombos/man/Rcolombos.Rd
Rcolombos/man/listAnnotationTypes.Rd
Rcolombos/man/quick_search.Rd
Rcolombos/man/get_contrast_annotations.Rd
Rcolombos/man/advanced_search_by_both.Rd
Rcolombos/man/parseCompendium.Rd
Rcolombos/man/advanced_search.Rd
Rcolombos/man/getCompendium.Rd
Rcolombos/man/listOrganisms.Rd
Rcolombos/man/advanced_search_by_contrasts.Rd