Rcolombos: Interface to Colombos Compendia using the Exposed REST API
Version 2.0.2

Provides programmatic access to Colombos, a web based interface for exploring and analyzing comprehensive organism-specific cross-platform expression compendia of bacterial organisms.

Browse man pages Browse package API and functions Browse package files

AuthorPaolo Sonego <paolo.sonego@fmach.it>
Date of publication2015-11-02 11:51:15
MaintainerPaolo Sonego <paolo.sonego@fmach.it>
LicenseGPL-3
Version2.0.2
URL http://colombos.net/http://legacyv2.colombos.net/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("Rcolombos")

Man pages

advanced_search: This method mimics the advanced_search functionality of...
advanced_search_by_both: Accessory function allowing the advanced_search by both g_ids...
advanced_search_by_contrasts: Accessory function allowing the advanced_search by...
advanced_search_by_genes: Accessory function allowing the advanced_search by gene_ids,...
getCompendium: This method allows to download/import the full compendium for...
get_contrast_annotations: This method allows to retrieve all the annotations for the...
listAnnotationTypes: This method takes as parameter a string (the nickname of an...
listContrasts: This method takes as parameter a single string, representing...
listEntities: This method takes a string containing the nickname for the...
listGenes: This method takes as parameter a single string, representing...
listOrganisms: Returns a character vector corresponding to the currently...
parseCompendium: This method allows importing the full compendium for the...
quick_search: This method mimics the quick_search functionality of...
Rcolombos: Interface to Colombos Compendia using the Exposed REST API
switchVersion: Select the COLOMBOS REST API version to be used for...

Functions

Rcolombos Man page
Rcolombos-package Man page
advanced_search Man page Source code
advanced_search_by_both Man page Source code
advanced_search_by_contrasts Man page Source code
advanced_search_by_genes Man page Source code
getCompendium Man page Source code
get_contrast_annotations Man page Source code
listAnnotationTypes Man page Source code
listContrasts Man page Source code
listEntities Man page Source code
listGenes Man page Source code
listOrganisms Man page Source code
onAttach Source code
parseCompendium Man page Source code
quick_search Man page Source code
switchVersion Man page Source code

Files

NAMESPACE
R
R/Rcolombos.R
R/utilities.R
R/zzz.R
README.md
MD5
DESCRIPTION
man
man/advanced_search_by_genes.Rd
man/listContrasts.Rd
man/listGenes.Rd
man/listEntities.Rd
man/switchVersion.Rd
man/Rcolombos.Rd
man/listAnnotationTypes.Rd
man/quick_search.Rd
man/get_contrast_annotations.Rd
man/advanced_search_by_both.Rd
man/parseCompendium.Rd
man/advanced_search.Rd
man/getCompendium.Rd
man/listOrganisms.Rd
man/advanced_search_by_contrasts.Rd
Rcolombos documentation built on May 29, 2017, 11:33 a.m.