listEntities: This method takes a string containing the nickname for the...

In Rcolombos: Interface to Colombos Compendia using the Exposed REST API

Description

This method takes a string containing the nickname for the selected organism and a string containing the annotation type and return the available entities

Usage

listEntities(organism = "ecoli", annotation = "Pathway")

Arguments

organism	A character containing the organism id: use listOrganisms to display the available organisms.
annotation	A character containing the selected annotation type: use listAnnotationTypes to display the available types.

Value

A vector containing the available entities for the selected annotation type.

References

http://colombos.net

Examples

## Not run: 
 library("Rcolombos")
 pathway_entities <- listEntities(organism="bsubt", annotation="Pathway")
 Tr_entities <- listEntities("bsubt","Transcriptional regulation")

## End(Not run)

Rcolombos documentation built on May 1, 2019, 8:43 p.m.