parseCompendium: This method allows importing the full compendium for the...

In Rcolombos: Interface to Colombos Compendia using the Exposed REST API

Description

This method allows importing the full compendium for the selected organism from a local file

Usage

parseCompendium(destfile)

Arguments

destfile

A character containing the full path of the downloaded file

Value

A list containing two or three data.frames.

In case switchVersion is equal to 2:

exprdata	the full compendium for the selected organism
condannot	The condition annotation for the selected organism

In case switchVersion is equal to 3:

exprdata	the full compendium for the selected organism
refannot	The condition annotation for the reference contrasts
testannot	The condition annotation for the test contrasts

References

http://colombos.net

Examples

## Not run: 
library('Rcolombos')
mtube <- parseCompendium("mtube_compendium_data.zip")

## End(Not run)

Rcolombos documentation built on May 1, 2019, 8:43 p.m.