advanced_search_by_contrasts: Accessory function allowing the advanced_search by...

In Rcolombos: Interface to Colombos Compendia using the Exposed REST API

Description

Accessory function allowing the advanced_search by contrast_ids, go, experiment, condition

Usage

advanced_search_by_contrasts(organism = NULL, ids = NULL,
  geneNames = FALSE, c_search_type = NULL)

Arguments

organism	A character containing the organism id: use listOrganisms to display the available organisms.
ids	A vector of strings representing contrast_id, go terms, experiment id or condition id according the search type.
geneNames	boolean if == FALSE (default) return the locustag otherwise the gene_name for the selected genes.
c_search_type	A string either contrast_names. experiment, go, condition.

Value

A data.frame containing locustag (gene_names), contrasts and M-values for the current organism and genes.

References

http://colombos.net

Rcolombos documentation built on May 1, 2019, 8:43 p.m.