Description Usage Arguments Value References Examples
This method mimics the quick_search functionality of Colombos. It takes a string containg the nickname for the selected organism and a vector of string representing the genes of interest for the specified organism and returns a list containing the locustags (gene_names), contrasts and M-values for the current selection.
1 | quick_search(organism = "ecoli", genes, geneNames = FALSE)
|
organism |
A character containing the organism id: use |
genes |
A vector of strings representing the genes of interest. |
geneNames |
boolean if == FALSE (default) returns the locustag otherwise the gene_name for the selected genes. |
A data.frame containing locustag (gene_names), contrasts and M-values for the current organism and genes.
http://colombos.net
1 2 3 4 5 6 7 8 | ## Not run:
library("Rcolombos")
my_module <- quick_search(organism="ecoli",
genes=c("b0400","b2805","b0567"),
geneNames=FALSE)
heatmap(as.matrix(my_module), col=terrain.colors(15))
## End(Not run)
|
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