get_contrast_annotations: This method allows to retrieve all the annotations for the...

Description Usage Arguments Value References Examples

View source: R/utilities.R

Description

This method allows to retrieve all the annotations for the Reference and Test conditions for a selected organism (nickname) and for a user specified contrast name. Please be aware that only one contrast is allowed in input. It returns a list containing both ReferenceAnnnotation and TestAnnotation. and return the available entities

Usage

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get_contrast_annotations(organism = "bsubt",
  contrast_name = "GSM27217.ch2-vs-GSM27217.ch1")

Arguments

organism

A character containing the organism id: use listOrganisms to display the available organisms.

contrast_name

annotation A character containing the selected contrast_name type: use listContrasts to display the available contrast names.

Value

A list of two data.frame, ReferenceAnnnotation and TestAnnotation, containing 2 columns: both the properties and the values for the selected contrast

References

http://colombos.net

Examples

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## Not run: 
 library("Rcolombos")
 out <- get_contrast_annotations(organism="bsubt",
 contrast_name="GSM27217.ch2-vs-GSM27217.ch1")

## End(Not run)

Rcolombos documentation built on May 1, 2019, 8:43 p.m.