advanced_search_by_both: Accessory function allowing the advanced_search by both g_ids...

Description Usage Arguments Value References

View source: R/Rcolombos.R

Description

Accessory function allowing the advanced_search by both g_ids and c_ids

Usage

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advanced_search_by_both(organism, g_ids, geneNames, c_ids, g_search_type,
  ann_type, c_search_type)

Arguments

organism

A character containing the organism id: use listOrganisms to display the available organisms.

g_ids

A vector of strings representing contrast_id, go terms, experiment id or condition id according the search type.

geneNames

boolean if == FALSE (default) return the locustag otherwise the gene_name for the selected genes.

c_ids

A vector of strings representing contrast_id, go terms, experiment id or condition id according the search type.

g_search_type

A string either genes, go or annotation.

ann_type

A string containing the selected gene_annotation_type: use listEntities to display the available entities.

c_search_type

A string either contrast_names. experiment, go, condition.

Value

A data.frame containing locustag (gene_names), contrasts and M-values for the current organism and genes.

References

http://colombos.net


Rcolombos documentation built on May 1, 2019, 8:43 p.m.