Files in SQMtools

Analyze Results Generated by the 'SqueezeMeta' Pipeline

R/figures.R R/summary_bunch.R R/combineSQMlite.R R/loadSQM.R R/summary.R R/Hadza.R R/ext_bindings.R R/subset_methods.R R/extra_methods.R R/mostVariable.R R/MGKOs.R R/mostAbundant.R R/exportTable.R R/exportSeqs.R R/combineSQM.R R/exportKrona.R R/aggregate_methods.R R/genericTable.R R/USiCGs.R R/summary_lite.R R/RecA.R R/exportPathway.R R/zzz.R R/MGOGs.R R/seqvec2fasta.R R/bin_methods.R R/CheckMProkaryote.R R/loadSQMlite.R R/copy_number.R man/exportTable.Rd man/plotBars.Rd man/subsetTax.Rd man/RecA.Rd man/combineSQMlite.Rd man/subsetRand.Rd man/exportKrona.Rd man/Hadza.Rd man/SQM_to_microeco.Rd man/subsetContigs.Rd man/loadSQM.Rd man/mostVariable.Rd man/subsetBins.Rd man/combineSQM.Rd man/summary.SQMbunch.Rd man/plotBins.Rd man/subsetORFs.Rd man/rowMins.Rd man/MGKOs.Rd man/MGOGs.Rd man/create_bin.Rd man/exportBins.Rd man/SQM_to_phyloseq.Rd man/summary.SQMlite.Rd man/mostAbundant.Rd man/find_redundant_contigs.Rd man/USiCGs.Rd man/subsetSamples.Rd man/exportContigs.Rd man/remove_contigs_from_bin.Rd man/summary.SQM.Rd man/CheckMProkaryote.Rd man/rowMaxs.Rd man/plotTaxonomy.Rd man/plotFunctions.Rd man/seqvec2fasta.Rd man/plotHeatmap.Rd man/loadSQMlite.Rd man/exportORFs.Rd man/subsetFun.Rd man/exportPathway.Rd