create_bin: Create a bin from a vector of contigs

In SQMtools: Analyze Results Generated by the 'SqueezeMeta' Pipeline

Create a bin from a vector of contigs

Description

Create a bin from a vector of contigs

Usage

create_bin(SQM, bin, contigs, delete_overlapping_bins = FALSE)

Arguments

SQM	A SQM object.
bin	character. Name of the bin to be created.
contigs	character. Vector with the names of the contigs that will be included in the new bin.
delete_overlapping_bins	logical. If TRUE, bins that originally contained any of the provided contigs will be removed from the object. Default FALSE.

Value

SQM object with the new binning information, including recalculated bin statistics if possible.

See Also

find_redundant_contigs, remove_contigs_from_bin

SQMtools documentation built on April 3, 2025, 6:16 p.m.