exportTable: Export results in tabular format

In SQMtools: Analyze Results Generated by the 'SqueezeMeta' Pipeline

Export results in tabular format

Description

This function is a wrapper for R's write.table function.

Usage

exportTable(table, output_name)

Arguments

table	vector, matrix or data.frame. The table to be written.
output_name	Either a character string naming a file or a connection open for writing. ‘""’ indicates output to the console.

Examples

data(Hadza)
Hadza.iron = subsetFun(Hadza, "iron")
# Write the taxonomic distribution at the genus level of all the genes related to iron.
exportTable(Hadza.iron$taxa$genus$percent, file.path(tempdir(), "Hadza.ironGenes.genus.tsv"))
# Now write the distribution of the different iron-related COGs
#  (Clusters of Orthologous Groups) across samples.
exportTable(Hadza.iron$functions$COG$tpm, file.path(tempdir(), "Hadza.ironGenes.COG.tsv"))
# Now write all the information contained in the ORF table.
exportTable(Hadza.iron$orfs$table, file.path(tempdir(), "Hadza.ironGenes.orftable.tsv"))

SQMtools documentation built on April 3, 2025, 6:16 p.m.