combineSQMlite: Combine several SQM or SQMlite objects

In SQMtools: Analyze Results Generated by the 'SqueezeMeta' Pipeline

Combine several SQM or SQMlite objects

Description

Combine an arbitrary number of SQM or SQMlite objects into a single SQMlite object. This function accepts objects originating from different projects (i.e. different SqueezeMeta runs).

Usage

combineSQMlite(...)

Arguments

...	an arbitrary number of SQM or SQMlite objects. Alternatively, a single list containing an arbitrary number of SQMlite objects.

Value

A SQMlite object

See Also

combineSQM

Examples

## Not run: 
data(Hadza)
# Load data coming from a different run
other = loadSQMlite("/path/to/other/project/tables") # e.g. if the project was run using sqm_reads
# (We could also use loadSQM to load the data as long as the data comes from a SqueezeMeta run)
combined = combineSQMlite(Hadza, other)
# Now we can plot together the samples from Hadza and the second project
plotTaxonomy(combined, 'family')

## End(Not run)

SQMtools documentation built on April 3, 2025, 6:16 p.m.