CheckMProkaryote: CheckM reference markers for Prokaryotes
In SQMtools: Analyze Results Generated by the 'SqueezeMeta' Pipeline
CheckMProkaryote R Documentation
CheckM reference markers for Prokaryotes
Description
List of Universal Single Copy Genes for Bacteria and Archaea.
Usage
data(CheckMProkaryote)
Format
List containing vectors of PFAMs, each vector corresponding to a different set of collocated markers.
References
Parks, Imelfort, Skennerton, Hugenholtz & Tyson (2015).
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Genome Res. 25:1043-1055.
(PubMed).
See Also
USiCGs, MGOGs and MGKOs for an alternative set of single copy genes, and for examples on how to generate copy numbers.
SQMtools documentation built on April 3, 2025, 6:16 p.m.
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| CheckMProkaryote | R Documentation |
CheckM reference markers for Prokaryotes
Description
List of Universal Single Copy Genes for Bacteria and Archaea.
Usage
data(CheckMProkaryote)
Format
List containing vectors of PFAMs, each vector corresponding to a different set of collocated markers.
References
Parks, Imelfort, Skennerton, Hugenholtz & Tyson (2015). CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Genome Res. 25:1043-1055. (PubMed).
See Also
USiCGs, MGOGs and MGKOs for an alternative set of single copy genes, and for examples on how to generate copy numbers.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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