Hadza: Hadza hunter-gatherer gut metagenomes
In SQMtools: Analyze Results Generated by the 'SqueezeMeta' Pipeline
Hadza R Documentation
Hadza hunter-gatherer gut metagenomes
Description
Subset of two bins (and the associated contigs and genes)
generated by running SqueezeMeta on two gut metagenomic samples
obtained from two hunter-gatherers of the Hadza ethnic group.
Usage
data(Hadza)
Format
A SQM object; see loadSQM.
Source
References
Rampelli et al., 2015. Metagenome Sequencing of the Hadza
Hunter-Gatherer Gut Microbiota. Curr. biol. 25:1682-93
(PubMed).
Examples
data(Hadza)
plotTaxonomy(Hadza, "genus", rescale=TRUE)
plotFunctions(Hadza, "COG")
SQMtools documentation built on April 3, 2025, 6:16 p.m.
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| Hadza | R Documentation |
Hadza hunter-gatherer gut metagenomes
Description
Subset of two bins (and the associated contigs and genes) generated by running SqueezeMeta on two gut metagenomic samples obtained from two hunter-gatherers of the Hadza ethnic group.
Usage
data(Hadza)
Format
A SQM object; see loadSQM.
Source
References
Rampelli et al., 2015. Metagenome Sequencing of the Hadza Hunter-Gatherer Gut Microbiota. Curr. biol. 25:1682-93 (PubMed).
Examples
data(Hadza)
plotTaxonomy(Hadza, "genus", rescale=TRUE)
plotFunctions(Hadza, "COG")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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