TransPhylo: Inference of Transmission Tree from a Dated Phylogeny

Inference of transmission tree from a dated phylogeny. Includes methods to simulate and analyse outbreaks. The methodology is described in Didelot et al. (2014) <doi:10.1093/molbev/msu121>, Didelot et al. (2017) <doi:10.1093/molbev/msw275>.

Package details

AuthorXavier Didelot [aut, cre] (<>), Yuanwei Xu [ctb]
MaintainerXavier Didelot <>
LicenseGPL (>= 2)
Package repositoryView on CRAN
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TransPhylo documentation built on April 20, 2021, 5:09 p.m.