Description Usage Arguments Value
Calculates the log-probability of a transmission tree
1 2 3 4 5 6 7 8 9 10 11 12 |
ttree |
Transmission tree |
rOff |
First parameter of the negative binomial distribution for offspring number |
pOff |
Second parameter of the negative binomial distribution for offspring number |
pi |
probability of sampling an infected individual |
shGen |
Shape parameter of the Gamma probability density function representing the generation time |
scGen |
Scale parameter of the Gamma probability density function representing the generation time |
shSam |
Shape parameter of the Gamma probability density function representing the sampling time |
scSam |
Scale parameter of the Gamma probability density function representing the sampling time |
dateT |
Date when process stops (this can be Inf for fully simulated outbreaks) |
delta_t |
Grid precision |
Probability of the transmission tree
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.