plotCTree: Plot both phylogenetic and transmission trees using colors on...
In TransPhylo: Inference of Transmission Tree from a Dated Phylogeny

Description Usage Arguments Value Examples

View source: R/plotCTree.R

Plot both phylogenetic and transmission trees using colors on the phylogeny

plotCTree(
  tree,
  showLabels = TRUE,
  showStars = TRUE,
  cols = NA,
  maxTime = NA,
  cex = 1
)

`tree`	Combined phylogenetic/transmission tree
`showLabels`	Whether or not to show the labels
`showStars`	Whether or not to show stars representing transmission events
`cols`	Colors to use for hosts
`maxTime`	Maximum time to show on the x axis
`cex`	Expansion factor

Returns invisibly the first parameter

1	plotCTree(simulateOutbreak())

TransPhylo documentation built on April 20, 2021, 5:09 p.m.

TransPhylo index

Package overview README.md Inference of transmission tree from a dated phylogeny Introducing the R package TransPhylo Simultaneous Inference of Multiple Transmission Trees

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Tweet to @rdrrHQ

GitHub issue tracker

ian@mutexlabs.com