TransPhylo
Inference of Transmission Tree from a Dated Phylogeny

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phyloFromPTree: Converts a phylogenetic tree into an ape phylo object

phyloFromPTree: Converts a phylogenetic tree into an ape phylo object
In TransPhylo: Inference of Transmission Tree from a Dated Phylogeny

Description Usage Arguments Value Examples

View source: R/phyloFromPTree.R

Description

Converts a phylogenetic tree into an ape phylo object

Usage

1
phyloFromPTree(ptree)

Arguments

ptree

phylogenetic tree

Value

phylo object

Examples

1
phyloFromPTree(extractPTree(simulateOutbreak()))

Example output

Phylogenetic tree with 1 tips and 1 internal nodes.

Tip labels:
  1

Rooted; no branch lengths.

TransPhylo documentation built on April 20, 2021, 5:09 p.m.

Related to phyloFromPTree in TransPhylo...

TransPhylo index
Package overview README.md Inference of transmission tree from a dated phylogeny Introducing the R package TransPhylo Simultaneous Inference of Multiple Transmission Trees

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