probPTreeGivenTTreeR: Calculate the probability of a phylogenetic tree given a...

Description Usage Arguments Value

View source: R/probPTreeGivenTTree.R

Description

Calculate the probability of a phylogenetic tree given a transmission tree

Usage

1
probPTreeGivenTTreeR(ctree, neg, w = NULL)

Arguments

ctree

Combined phylogenetic/transmission tree

neg

Within-host coalescent rate

w

Vector of hosts for which to calculate the probability, or NULL for all

Value

Probability of phylogeny given transmission tree


TransPhylo documentation built on April 20, 2021, 5:09 p.m.