ConvertID: Connect and parse UniProt database identifiers information.

In UniprotR: Retrieving Information of Proteins from Uniprot

Connect and parse UniProt database identifiers information.

Description

The function is work to convert the UniProtKB AC/ID to any database identifiers available by the UniProtKB. For more information about available database identifiers see https://www.uniprot.org/help/id_mapping. see https://raw.githubusercontent.com/MohmedSoudy/UniprotR/master/uniprot_ids.csv

Usage

ConvertID(ProteinAccList,ID_from="UniProtKB_AC-ID",ID_to=NULL,taxId=NULL,path=NULL)

Arguments

ProteinAccList	Vector of UniProt Accession/s
ID_from	string of database identifier abbreviation, from which the Accession/ID will be converted
ID_to	string of database identifier abbreviation, to which the Accession/ID will be converted. default is all database identifier available in UniProtKB
taxId	string Needed when the ID_to is 'UniProtKB' that could be '9606' for human.
path	path to save excel file containig results returened by the function.

Value

DataFrame where column one contains the Accession/ID before conversion and other columns contains the Accession/ID after conversion

Note

The function also, Creates a csv file with the retrieved information.

Author(s)

Mohmed Soudy [e-mail] and Ali Mostafa [e-mail]

UniprotR documentation built on May 29, 2024, 1:08 a.m.