ConvertID: Connect and parse UniProt database identifiers information.

In UniprotR: Retrieving Information of Proteins from Uniprot

Connect and parse UniProt database identifiers information.

Description

The function is work to convert the UniProtKB AC/ID to any database identifiers available by the UniProtKB. For more information about available database identifiers see https://www.uniprot.org/help/id_mapping. see https://raw.githubusercontent.com/MohmedSoudy/UniprotR/master/uniprot_ids.csv

Usage

ConvertID(ProteinAccList , ID_from = "UniProtKB_AC-ID" , ID_to = NULL
 , directorypath = NULL)

Arguments

ProteinAccList	Vector of UniProt Accession/s
ID_from	string of database identifier abbreviation, from which the Accession/ID will be converted
ID_to	string of database identifier abbreviation, to which the Accession/ID will be converted. default is all database identifier available in UniProtKB
directorypath	path to save excel file containig results returened by the function.

Value

DataFrame where column one contains the Accession/ID before conversion and other columns contains the Accession/ID after conversion

Note

The function also, Creates a csv file with the retrieved information.

Author(s)

Mohmed Soudy [e-mail] and Ali Mostafa [e-mail]

UniprotR documentation built on Aug. 27, 2023, 5:06 p.m.