Enrichment.KEGG: Connect and parse UniProt information
In UniprotR: Retrieving Information of Proteins from Uniprot
View source: R/PathwayAnalysis.R
Enrichment.KEGG R Documentation
Connect and parse UniProt information
Description
This function is used for Enrichment analysis of given list of genes or proteins from KEGG database
Usage
Enrichment.KEGG(Accs,OS="hsapiens",p_value=0.05,directorypath=NULL,top=10)
Arguments
Accs
Vector of UniProt Accession/s or genes
OS
organism name Example: human - 'hsapiens', mouse - 'mmusculus'
p_value
custom p-value threshold for significance, default = 0.05
directorypath
Path to save output plot
top
Top N terms to be visualized
Author(s)
Mohmed Soudy Mohamed.soudy@57357.com and Ali Mostafa ali.mo.anwar@std.agr.cu.edu.eg
UniprotR documentation built on May 29, 2024, 1:08 a.m.
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View source: R/PathwayAnalysis.R
| Enrichment.KEGG | R Documentation |
Connect and parse UniProt information
Description
This function is used for Enrichment analysis of given list of genes or proteins from KEGG database
Usage
Enrichment.KEGG(Accs,OS="hsapiens",p_value=0.05,directorypath=NULL,top=10)
Arguments
Accs |
Vector of UniProt Accession/s or genes |
OS |
organism name Example: human - 'hsapiens', mouse - 'mmusculus' |
p_value |
custom p-value threshold for significance, default = 0.05 |
directorypath |
Path to save output plot |
top |
Top N terms to be visualized |
Author(s)
Mohmed Soudy Mohamed.soudy@57357.com and Ali Mostafa ali.mo.anwar@std.agr.cu.edu.eg
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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