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# Definitions of internal constants.
.pearsonFallbacks = c("none", "individual", "all");
.threadAllowVar = "ALLOW_WGCNA_THREADS"
.zeroMADWarnings = c("Some results will be NA.",
"Pearson correlation was used for individual columns with zero (or missing) MAD.",
"Pearson correlation was used for entire variable.");
..minNGenes = 4;
..minNSamples = 4;
.largestBlockSize = 1e8;
.networkTypes = c("unsigned", "signed", "signed hybrid");
.adjacencyTypes = c(.networkTypes, "distance");
.TOMTypes = c("none", "unsigned", "signed", "signed Nowick",
"unsigned 2", "signed 2", "signed Nowick 2");
.TOMDenoms = c("min", "mean");
.corTypes = c("pearson", "bicor");
.corFnc = c("cor", "bicor", "cor");
.corOptions = c("use = 'p'", "use = 'p'", "use = 'p', method = 'spearman'");
.corOptionList = list( list(use = 'p'), list(use = 'p'), list(use = 'p', method = "spearman"));
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