dudi.coa: Correspondence Analysis

In ade4: Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

Correspondence Analysis

Description

performs a correspondence analysis.

Usage

dudi.coa(df, scannf = TRUE, nf = 2)

Arguments

df	a data frame containing positive or null values
scannf	a logical value indicating whether the eigenvalues bar plot should be displayed
nf	if scannf FALSE, an integer indicating the number of kept axes

Value

returns a list of class coa and dudi (see dudi) containing

N	the sum of all the values of the initial table

Author(s)

Daniel Chessel
Anne-Béatrice Dufour [e-mail]

References

Benzécri, J.P. and Coll. (1973) L'analyse des données. II L'analyse des correspondances, Bordas, Paris. 1–620.

Greenacre, M. J. (1984) Theory and applications of correspondence analysis, Academic Press, London.

Examples

data(rpjdl)
chisq.test(rpjdl$fau)$statistic
rpjdl.coa <- dudi.coa(rpjdl$fau, scannf = FALSE, nf = 4)
sum(rpjdl.coa$eig)*rpjdl.coa$N # the same

if(adegraphicsLoaded()) {
  g1 <- s.label(rpjdl.coa$co, plab.cex = 0.6, lab = rpjdl$frlab, plot = FALSE)
  g2 <- s.label(rpjdl.coa$li, plab.cex = 0.6, plot = FALSE)
  cbindADEg(g1, g2, plot = TRUE)
} else {
  par(mfrow = c(1,2))
  s.label(rpjdl.coa$co, clab = 0.6, lab = rpjdl$frlab)
  s.label(rpjdl.coa$li, clab = 0.6)
  par(mfrow = c(1,1))
}

data(bordeaux)
db <- dudi.coa(bordeaux, scan = FALSE)
db
score(db)

ade4 documentation built on Feb. 16, 2023, 7:58 p.m.