s.logo: Representation of an object in a graph by a picture

In ade4: Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

Representation of an object in a graph by a picture

Description

performs the scatter diagrams using pictures to represent the points

Usage

s.logo(dfxy, listlogo, klogo=NULL, clogo=1, rectlogo=TRUE,
    xax = 1, yax = 2, neig = NULL, cneig = 1, xlim = NULL, ylim = NULL, 
    grid = TRUE, addaxes = TRUE, cgrid = 1, include.origin = TRUE, 
    origin = c(0, 0), sub = "", csub = 1.25, possub = "bottomleft", 
    pixmap = NULL, contour = NULL, area = NULL, add.plot = FALSE) 

Arguments

dfxy	a data frame with at least two coordinates
listlogo	a list of pixmap pictures
klogo	a numeric vector giving the order in which pictures of listlogo are used; if NULL, the order is the same than the rows of dfxy
clogo	a numeric vector giving the size factor applied to each picture
rectlogo	a logical to decide whether a rectangle should be drawn around the picture (TRUE) or not (FALSE)
xax	the column number for the x-axis
yax	the column number for the y-axis
neig	a neighbouring graph
cneig	a size for the neighbouring graph lines used with par("lwd")*cneig
xlim	the ranges to be encompassed by the x axis, if NULL, they are computed
ylim	the ranges to be encompassed by the y axis, if NULL, they are computed
grid	a logical value indicating whether a grid in the background of the plot should be drawn
addaxes	a logical value indicating whether the axes should be plotted
cgrid	a character size, parameter used with par("cex")* cgrid to indicate the mesh of the grid
include.origin	a logical value indicating whether the point "origin" should be belonged to the graph space
origin	the fixed point in the graph space, for example c(0,0) the origin axes
sub	a string of characters to be inserted as legend
csub	a character size for the legend, used with par("cex")*csub
possub	a string of characters indicating the sub-title position ("topleft", "topright", "bottomleft", "bottomright")
pixmap	an object 'pixmap' displayed in the map background
contour	a data frame with 4 columns to plot the contour of the map : each row gives a segment (x1,y1,x2,y2)
area	a data frame of class 'area' to plot a set of surface units in contour
add.plot	if TRUE uses the current graphics window

Value

The matched call.

Author(s)

Daniel Chessel and Thibaut Jombart [e-mail]

Examples

if(requireNamespace("pixmap", quietly = TRUE) & requireNamespace("sp", quietly = TRUE)) {
  if(!adegraphicsLoaded()) {
  	data(ggtortoises)
  	a1 <- ggtortoises$area
  	area.plot(a1)
  	rect(min(a1$x), min(a1$y), max(a1$x), max(a1$y), col = "lightblue")
  	invisible(lapply(split(a1, a1$id), function(x) polygon(x[, -1],col = "white")))
  	s.label(ggtortoises$misc, grid = FALSE, include.ori = FALSE, addaxes = FALSE, add.p = TRUE)
  	listico <- ggtortoises$ico[as.character(ggtortoises$pop$carap)]
  	s.logo(ggtortoises$pop, listico, add.p = TRUE)
  	
  } else {
  	data(capitales, package = "ade4")
  	# 'capitales' data doesn't work with ade4 anymore
    g3 <- s.logo(capitales$xy[sort(rownames(capitales$xy)), ], capitales$logo, 
      Sp = capitales$Spatial, pbackground.col = "lightblue", pSp.col = "white", 
      pgrid.draw = FALSE)
  }
}

ade4 documentation built on Feb. 16, 2023, 7:58 p.m.